PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29822.m003477
Common NameRCOM_0855040
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family AP2
Protein Properties Length: 372aa    MW: 42596.4 Da    PI: 9.1002
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29822.m003477genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.61.1e-1175131155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s+y+GV++++++gr++A+++d  s+n   k+k  + g ++ +e Aa+a++ a++k++g
  29822.m003477  75 SRYRGVSRHRWTGRFEAHLWDkLSWNVtqKKKGKQ-GAYDEEESAARAYDLAALKYWG 131
                    79*******************88887784446666.9*******************98 PP
2AP252.51.2e-16174225155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  29822.m003477 174 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 225
                    89****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.91E-1675141No hitNo description
PfamPF008473.5E-975131IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-1475141IPR016177DNA-binding domain
SMARTSM003802.2E-1876145IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-1276140IPR001471AP2/ERF domain
PROSITE profilePS5103218.42676139IPR001471AP2/ERF domain
PRINTSPR003678.0E-67788IPR001471AP2/ERF domain
CDDcd000181.55E-23174235No hitNo description
SuperFamilySSF541715.75E-18174235IPR016177DNA-binding domain
PfamPF008474.5E-12174225IPR001471AP2/ERF domain
SMARTSM003802.7E-26175239IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-18175234IPR001471AP2/ERF domain
PROSITE profilePS5103218.953175233IPR001471AP2/ERF domain
PRINTSPR003678.0E-6215235IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MEMMMVKNEE ISGRRRASVT ESEAYVARCV KRRRRDAAVV TVGGDDSQSH QQQQQQQPEQ  60
QAHQISAATT VKRSSRYRGV SRHRWTGRFE AHLWDKLSWN VTQKKKGKQG AYDEEESAAR  120
AYDLAALKYW GTSTFTNFPI SDYEKEIEIM QTVTKEEYLA SLRRKSSGFS RGVSKYRGVA  180
RHHHNGRWEA RIGRVFGNKY LYLGTYSTQE EAARAYDIAA IEYRGINAVT NFDLSTYIRW  240
LKPEVAAQVA ANEPQTVAES RMLPSINNRI AREESKPSFF SATPFSLDCW SYPRKQEEFQ  300
NRTPITPCSK TSSPTALSLL LRSSIFRELV EKNSNVSEDE NEGEETKNQS QIGSDDEFGG  360
LFYERIGDIP FI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11334RRRASVTESEAYVARCVKRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMap29822.m003477
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015573687.10.0AP2-like ethylene-responsive transcription factor At1g79700
TrEMBLB9RUM90.0B9RUM9_RICCO; Uncharacterized protein
STRINGXP_002517474.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21983283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.32e-90AP2 family protein