PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29792.m000600
Common NameLOC8283452, RCOM_0793640
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 438aa    MW: 48097.7 Da    PI: 6.8572
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29792.m000600genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.21.8e-1765114255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    +y+GVr+++ +gr++AeIrdp     +  r +lg+f+taeeAa a++ a+++++g
  29792.m000600  65 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 114
                    59*******.**********93....35999**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.58E-2165122IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.6E-2965121IPR001471AP2/ERF domain
SMARTSM003802.3E-3365128IPR001471AP2/ERF domain
CDDcd000188.13E-3065121No hitNo description
PfamPF008475.1E-1165114IPR001471AP2/ERF domain
PROSITE profilePS5103222.11565122IPR001471AP2/ERF domain
PRINTSPR003672.7E-96677IPR001471AP2/ERF domain
PRINTSPR003672.7E-988104IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MEEALRRLNG MTHLQESIIP QEPITDNQKK NTNGSSRTTP TPTTTTTTNK RSLKETSGGT  60
GCTMRYRGVR RRPWGRYAAE IRDPQSKERR WLGTFDTAEE AACAYDCAAR AMRGLKARTN  120
FVYPSSDLHS TTDHHFLPPF NFSKQAQPSV RDLPSRHSNT NSSNWSSFSN PHVADFSGCA  180
TQRTSVNAAS SLNMLLFRDF LNPSSGYNTP QGLYDQFPSY VNGPSSSSCT SVSTTSMSNA  240
SLVNPSSGSN VSDTFTGSSL SSLPLVDDNQ NYNSSSAAAG VTGSDRTNVQ ADTYMEFFPQ  300
GPSDSGLLHE IIQGFLPKTS SEKIDHSSES SINCTGQSMV NAPVSEISPG EFRSIKNEHL  360
VKNQNLGLYL DHHHGVPAQF ESFHGVASHY HVPYSNDQLL QNHHLLHHHQ IMGSDSVIDD  420
IFQYPDLMSA FAARVQNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-19651211471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29792.m000600
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002530032.10.0ethylene-responsive transcription factor ESR2
TrEMBLB9SVL30.0B9SVL3_RICCO; Uncharacterized protein
STRINGXP_002530032.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41003256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.14e-15DORNROSCHEN-like