PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29751.m001878 | ||||||||
Common Name | LOC8284108, RCOM_0733120 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | C2H2 | ||||||||
Protein Properties | Length: 181aa MW: 20752.5 Da PI: 7.5359 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.3 | 0.00012 | 30 | 52 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ Cg+ F + L H+++H 29751.m001878 30 YICNFCGREFGSAQALGGHMNVH 52 89*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.57E-7 | 27 | 57 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.3E-4 | 28 | 54 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0063 | 30 | 52 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.718 | 30 | 57 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 8.6E-7 | 30 | 53 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 32 | 52 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MERARCCEED AFAEDAAGAF GAFVWPPRSY ICNFCGREFG SAQALGGHMN VHRRDRARLK 60 QSPGIENDYL HHHKQQPQQH QRQNLHNILV YDPDSIAKFS TPLTEENSQK PEVAESDGKK 120 ENVSRKRWRC DELPLPLFPF FTKISKPNSM KKVHLQEEVK GLCLGATQDL DLELRLGFSL 180 F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 6e-11 | 25 | 52 | 2 | 29 | superman protein |
2l1o_A | 6e-11 | 25 | 52 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29751.m001878 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002520514.1 | 1e-135 | transcriptional regulator SUPERMAN | ||||
TrEMBL | B9S3E5 | 1e-134 | B9S3E5_RICCO; Transcriptional regulator SUPERMAN, putative | ||||
STRING | XP_002520514.1 | 1e-134 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1776 | 30 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06070.1 | 4e-20 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | 29751.m001878 |
Entrez Gene | 8284108 |