PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29736.m002089
Common NameLOC8270356, RCOM_0699450
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB_related
Protein Properties Length: 331aa    MW: 35473.8 Da    PI: 9.227
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29736.m002089genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.38.2e-1493137347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky
    29736.m002089  93 PWTEEEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 137
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.614518IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129417.37786142IPR017930Myb domain
SuperFamilySSF466894.86E-1788142IPR009057Homeodomain-like
TIGRFAMsTIGR015573.3E-1789140IPR006447Myb domain, plants
SMARTSM007171.6E-1090140IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-1192137IPR009057Homeodomain-like
CDDcd001672.06E-993138No hitNo description
PfamPF002495.7E-1193137IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0046686Biological Processresponse to cadmium ion
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MSRSCSQCGN NGHNSRTCGE NSGGSAAGES GIMLFGVRVM MEGASFRKSV SMNNLSQYDQ  60
PQDPNADVAA AGYESDDVVH ASGRSRERKR GVPWTEEEHR LFLLGLQKVG KGDWRGISRN  120
FVKTRTPTQV ASHAQKYFLR RNNQNRRRRR SSLFDITTDT FLGSTIEEEQ VVMHQETATA  180
LPLPPQPHLS NNNLGVGGFP KSTFAVSLSP AVLPVKGDIN NSMESLSLGP MISIISSSSK  240
AKTLSNPLPP PKLIRPIPII PVAASSRIGE LNLDQNSPTT EETLPLSLKL STPSSDEPVP  300
TASTPTTTLS SSSAAAFQAM SGHGDSTITV A
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00630PBMTransfer from PK17526.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29736.m002089
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002520190.10.0transcription factor MYB1R1
TrEMBLB9S2H10.0B9S2H1_RICCO; Transcription factor, putative
STRINGXP_002520190.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53383350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70000.23e-78MYB_related family protein