PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29726.m004094 | ||||||||
Common Name | LOC8278775, RCOM_0682370 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | ERF | ||||||||
Protein Properties | Length: 247aa MW: 27627.4 Da PI: 8.0666 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.3 | 1.3e-20 | 93 | 141 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp + r++lg+f taeeAa+a+++a+k+++g 29726.m004094 93 YRGIRQRP-WGKWAAEIRDPQ----KgVRVWLGTFSTAEEAARAYDEAAKRIRG 141 9*******.**********94....35************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 9.15E-23 | 92 | 150 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.197 | 92 | 149 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.7E-39 | 92 | 155 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.9E-33 | 92 | 149 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.24E-33 | 92 | 148 | No hit | No description |
Pfam | PF00847 | 2.6E-14 | 93 | 141 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.4E-12 | 93 | 104 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.4E-12 | 115 | 131 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008219 | Biological Process | cell death | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051707 | Biological Process | response to other organism | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MCGGSILADA DDVKPRRRLF SQDLWAELDP FSNFFGLNYL TDSANKNHLS THFDFKLTPQ 60 KPKLQLNSNQ VAVEKAIEKE ENKKAPRIRK NIYRGIRQRP WGKWAAEIRD PQKGVRVWLG 120 TFSTAEEAAR AYDEAAKRIR GDKAKLNFPT PTPLAAPAPA PAAPTEVEAP VLPPPSKKSC 180 TMSSPETKPV EYGPKEEITS LETFLGLEPE QMVAQLNGSG CEGGDFVELW MLDDLVSHHQ 240 NKRPFPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-22 | 93 | 149 | 6 | 63 | ATERF1 |
3gcc_A | 1e-22 | 93 | 149 | 6 | 63 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00109 | PBM | Transfer from AT3G16770 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29726.m004094 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002516971.1 | 0.0 | ethylene-responsive transcription factor RAP2-3 isoform X1 | ||||
TrEMBL | B9RTA2 | 0.0 | B9RTA2_RICCO; Uncharacterized protein | ||||
STRING | XP_002516971.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4892 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 1e-36 | ethylene-responsive element binding protein |
Link Out ? help Back to Top | |
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Phytozome | 29726.m004094 |
Entrez Gene | 8278775 |