PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29726.m004015

Common Name

RCOM_0680380

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

MYB_related

Protein Properties

Length: 1119aa MW: 124433 Da PI: 8.1814

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29726.m004015	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.1	2.1e-08	46	81	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++eE e++++a +++G++ W ++a+ + R+ +++ 29726.m004015 46 QWSKEELERFYRAYRKHGKD-WGKVAAAVR-DRSVEMV 81 6***************99.******9.9998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.69E-10	32	93	IPR009057	Homeodomain-like
PROSITE profile	PS51293	10.898	42	93	IPR017884	SANT domain
SMART	SM00717	2.4E-4	43	91	IPR001005	SANT/Myb domain
Pfam	PF00249	2.1E-7	46	81	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.8E-4	46	81	IPR009057	Homeodomain-like
CDD	cd00167	2.40E-6	47	94	No hit	No description
Pfam	PF06584	3.2E-32	580	680	IPR033471	DIRP domain
SMART	SM01135	3.1E-57	580	681	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1119 aa Download sequence Send to blast
MAPSRKSRSV NKRFSYINEA TSNKTGENDN RRRQRKRKLS DMLGPQWSKE ELERFYRAYR 60 KHGKDWGKVA AAVRDRSVEM VEALYTMNRA YLNLPKGYAS AAGLIAMMTD HYTNLEESDS 120 EQEITEPVVA PRKPQKRSRG TKELDASPVP DLMQSQSAAS NFGCLSLLKK RRSGGRPWAV 180 GKRTPRVPVS FSYDKASGQK YISPIRPDLK LKADALDDDV AHEIALVLTE ASQRAGSPQA 240 SQTPNGKAET PSLTRNGEHM HVESEMTSSK PRGSEMDEGG CELSLGSTEA DMEHYARDKR 300 LTKGKGYHGR KPEVEDNIDN SSDDIKEACS GTEEGQKLGA IRGKFEVEVV GTKFARSSNK 360 GPRKRSKKVL FGEGEADAVD ALQTLADMSL RLPEALVDTE SSVHVDDQKT KIVAKSKLKG 420 NHSTAGVKVA SPKTTKGRVF LHDVSPIPKV KDAVHQISAG IGKRRKKSQP SKATDDVGDL 480 ISKGKSSHDT GYQKQGRPVK PSELNSSTDH GRESNDSAPS SIPVLSSKQF NLPTKVRSRR 540 KINTPKPLLD KDNQSSEDIK KLSNCLSSYL VRRWSIFEWF YSAIDYPWFA KREFVEYLDH 600 VGLGHIPRLT RVEWGVIRSS LGKPRRFSEQ FLSEEKEKLN QYRESVRKHY TELRAGTRDG 660 LPTDLARPLS VGQRIIALHP KTREIHDGSV LTVDHNRCRI QFDQPELGVE LVMDVDCMPL 720 NPLENMPASL TRQTVVFNRF IENLNELKMN GQPVERNMEG YIKFASCENM ENTDGLLHSS 780 PSTHHISNLM QHGKGYLANY STHVATESGE SVINQQAVNT QPFILAHIQA KDADIQALSD 840 LTRALDKKEA VVSELKRMND EVENEKDGEN SLKDSELFKK HYAAVLFQLN EVNEQVSSAL 900 LCLRQRNTYQ GNNPQMWMKP MTYIGEPVGH CSLFDRSADE TQESGSHVAE IVETSRAKAQ 960 TMVDAAMQAM SSLKKEGSNI EEAIDFVNNQ LSADDLSTSA VRSSIPANSV HSTVASQDQS 1020 SSCTTNLGPN SHAPETDMDH SPEQSEAQIP SEIITQCVAT LLMIQKCTER QFPPSDVAQV 1080 LDSAVTSLKP CCSQNLPIYA DIQKCMGIIR NQILALIPT

Sequence ? help Back to Top

Protein Sequence Length: 1119 aa Download sequence Send to blast

MAPSRKSRSV NKRFSYINEA TSNKTGENDN RRRQRKRKLS DMLGPQWSKE ELERFYRAYR  60
KHGKDWGKVA AAVRDRSVEM VEALYTMNRA YLNLPKGYAS AAGLIAMMTD HYTNLEESDS  120
EQEITEPVVA PRKPQKRSRG TKELDASPVP DLMQSQSAAS NFGCLSLLKK RRSGGRPWAV  180
GKRTPRVPVS FSYDKASGQK YISPIRPDLK LKADALDDDV AHEIALVLTE ASQRAGSPQA  240
SQTPNGKAET PSLTRNGEHM HVESEMTSSK PRGSEMDEGG CELSLGSTEA DMEHYARDKR  300
LTKGKGYHGR KPEVEDNIDN SSDDIKEACS GTEEGQKLGA IRGKFEVEVV GTKFARSSNK  360
GPRKRSKKVL FGEGEADAVD ALQTLADMSL RLPEALVDTE SSVHVDDQKT KIVAKSKLKG  420
NHSTAGVKVA SPKTTKGRVF LHDVSPIPKV KDAVHQISAG IGKRRKKSQP SKATDDVGDL  480
ISKGKSSHDT GYQKQGRPVK PSELNSSTDH GRESNDSAPS SIPVLSSKQF NLPTKVRSRR  540
KINTPKPLLD KDNQSSEDIK KLSNCLSSYL VRRWSIFEWF YSAIDYPWFA KREFVEYLDH  600
VGLGHIPRLT RVEWGVIRSS LGKPRRFSEQ FLSEEKEKLN QYRESVRKHY TELRAGTRDG  660
LPTDLARPLS VGQRIIALHP KTREIHDGSV LTVDHNRCRI QFDQPELGVE LVMDVDCMPL  720
NPLENMPASL TRQTVVFNRF IENLNELKMN GQPVERNMEG YIKFASCENM ENTDGLLHSS  780
PSTHHISNLM QHGKGYLANY STHVATESGE SVINQQAVNT QPFILAHIQA KDADIQALSD  840
LTRALDKKEA VVSELKRMND EVENEKDGEN SLKDSELFKK HYAAVLFQLN EVNEQVSSAL  900
LCLRQRNTYQ GNNPQMWMKP MTYIGEPVGH CSLFDRSADE TQESGSHVAE IVETSRAKAQ  960
TMVDAAMQAM SSLKKEGSNI EEAIDFVNNQ LSADDLSTSA VRSSIPANSV HSTVASQDQS  1020
SSCTTNLGPN SHAPETDMDH SPEQSEAQIP SEIITQCVAT LLMIQKCTER QFPPSDVAQV  1080
LDSAVTSLKP CCSQNLPIYA DIQKCMGIIR NQILALIPT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	31	37	RRQRKRK
2	31	38	RRQRKRKL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29726.m004015

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015573347.1	0.0	protein ALWAYS EARLY 3 isoform X2
Swissprot	Q6A332	0.0	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	B9RT24	0.0	B9RT24_RICCO; Always early, putative
STRING	XP_002516893.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1783	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Link Out ? help Back to Top
Phytozome	29726.m004015

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]