PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29706.m001283 | ||||||||
Common Name | LOC8284653, RCOM_0652480 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | GRF | ||||||||
Protein Properties | Length: 340aa MW: 38379.3 Da PI: 9.0923 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 79.2 | 3.8e-25 | 77 | 120 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e 29706.m001283 77 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVE 120 79***************************************987 PP | |||||||
2 | QLQ | 61.6 | 2.1e-21 | 11 | 46 | 1 | 36 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 s+FT++Q+q+L++Q+l+yKy++++ P+PpeL++ ++ 29706.m001283 11 SPFTPSQWQELEHQALIYKYMVSGIPIPPELIFTVK 46 89*****************************98776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 7.9E-13 | 11 | 47 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 5.9E-16 | 12 | 45 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.732 | 12 | 47 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.064 | 77 | 121 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.1E-21 | 78 | 120 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0030912 | Biological Process | response to deep water | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MLNATSTRNR SPFTPSQWQE LEHQALIYKY MVSGIPIPPE LIFTVKRSLE SSLASRLFPH 60 QPIGWGCFQV GFGRKADPEP GRCRRTDGKK WRCSKEAYPD SKYCERHMHR GRNRSRKPVE 120 LTSSTTNNTT ASTVTNPSLS INRSLSATTT NNNTTSPSGS SYSFSPLSSP MEPEFHASGH 180 NNILSPFPYS HSSSSRPQNS TTHNLFLDSG STSHVDKDYR YFNGMREGID ERTFFPEASS 240 GSSRNLQDSY QQLTMSSYKS YSHPQFESLA DSTSKHQQEQ PQHCFVLGTD FKSSTTRTIK 300 LEKESEAQKP LHHFFGEWPP KNSDSWLDLA STSRLHTADS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Acts together with GIF1 for the development of appropriate leaf size and shape through the promotion and/or maintenance of cell proliferation activity in leaf primordia. {ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:15960617}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29706.m001283 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC256987 | 2e-53 | KC256987.1 Caragana korshinskii GRL2 (GRL2) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002521329.1 | 0.0 | growth-regulating factor 5 | ||||
Swissprot | Q8L8A6 | 3e-77 | GRF5_ARATH; Growth-regulating factor 5 | ||||
TrEMBL | B9S5R0 | 0.0 | B9S5R0_RICCO; Uncharacterized protein | ||||
STRING | XP_002521329.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9744 | 31 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 7e-68 | growth-regulating factor 5 |
Link Out ? help Back to Top | |
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Phytozome | 29706.m001283 |
Entrez Gene | 8284653 |