PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29686.m000871

Common Name

LOC8276313, RCOM_0621430

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

C2H2

Protein Properties

Length: 289aa MW: 31096.5 Da PI: 9.5913

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29686.m000871	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.8	0.00017	103	125	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs++ L H++ H 29686.m000871 103 FSCNFCKREFSTSQALGGHQNAH 125 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.79E-6	100	130	No hit	No description
Gene3D	G3DSA:3.30.160.60	5.9E-4	101	129	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.531	103	130	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	105	125	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MESIRVEPCL SDASSISAAS EGATAPKVGS DHGKSVIDLR MKRETAPTAY EPNSRTLLDL 60 KLSSEGSVRG SRLDLNLFNP ASGGSSHEDQ TVAEKQPERT RVFSCNFCKR EFSTSQALGG 120 HQNAHKQERQ LAKRRHGMDL GAFGHYPYYP YSSLSPHPFY GSISRSLGVR MESLIQKPSS 180 FPWMSSSAGA GAAFRYSHGG WSRQQAMMNS QSSIDRLRAE SLNTINGGGL GTSPRFDENR 240 NNTLPNVGAS SSSNNLGIIK SSAGDNLRPA GRATGDQVDA LGIDLSLKL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29686.m000871

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002525555.2	0.0	zinc finger protein GIS, partial
TrEMBL	B9SHT6	0.0	B9SHT6_RICCO; Uncharacterized protein
STRING	XP_002525555.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1822	30	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01860.1	3e-17	C2H2 family protein

Link Out ? help Back to Top
Phytozome	29686.m000871
Entrez Gene	8276313