PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29676.m001667 | ||||||||
Common Name | LOC8260554, RCOM_0603270 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | Dof | ||||||||
Protein Properties | Length: 245aa MW: 25383.2 Da PI: 8.2256 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122.3 | 1.7e-38 | 28 | 87 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++l+cprCdstntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++P+Ggg+rkn k+s 29676.m001667 28 HEHLPCPRCDSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPIGGGTRKNAKRS 87 67899***************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-28 | 24 | 85 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.4E-33 | 30 | 85 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.152 | 31 | 85 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 33 | 69 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0042545 | Biological Process | cell wall modification | ||||
GO:0045787 | Biological Process | positive regulation of cell cycle | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MPSDTCSTET KRLTKPHNNV PGAPPPEHEH LPCPRCDSTN TKFCYYNNYN FSQPRHFCKS 60 CRRYWTHGGT LRDIPIGGGT RKNAKRSRTS SAVVGPITSN PVDHNLPLSA TPVLVPLMAN 120 QGQFIDGKGN GNNTTANSTV CGSFTSLLNT QGPGFLALGG FGLGLGTGFE DVGFGLGRGV 180 WPFPGVGDGG ASLGGGHGGS VGGGAVTGMS NTWHFEGGAE NGFVGAGDCF SWPDLAISTP 240 GNGLK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00402 | DAP | Transfer from AT3G50410 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29676.m001667 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin and salicylic acid (SA). {ECO:0000269|PubMed:10758484}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002522358.1 | 1e-178 | dof zinc finger protein DOF3.4 | ||||
Swissprot | Q39088 | 7e-61 | DOF34_ARATH; Dof zinc finger protein DOF3.4 | ||||
TrEMBL | B9S8N9 | 1e-177 | B9S8N9_RICCO; Zinc finger protein, putative | ||||
STRING | XP_002522358.1 | 1e-178 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2801 | 31 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50410.1 | 3e-58 | OBF binding protein 1 |
Link Out ? help Back to Top | |
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Phytozome | 29676.m001667 |
Entrez Gene | 8260554 |
Publications ? help Back to Top | |||
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