PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29631.m001056
Common NameLOC8276483, RCOM_0529500
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family HB-other
Protein Properties Length: 337aa    MW: 37849.5 Da    PI: 4.8079
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29631.m001056genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.2e-092803142155
                    HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
       Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                    k +yp+++++  LA+++gL+++q+ +WF N+R ++
  29631.m001056 280 KWPYPTEADKIALADSTGLDQKQINNWFINQRKRH 314
                    679*****************************885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012556.9E-2394138IPR005540KNOX1
PfamPF037905.1E-2296137IPR005540KNOX1
SMARTSM012562.0E-25146197IPR005541KNOX2
PfamPF037912.6E-24150196IPR005541KNOX2
PROSITE profilePS512139.132234254IPR005539ELK domain
PfamPF037891.3E-4234255IPR005539ELK domain
SMARTSM011880.0011234255IPR005539ELK domain
PROSITE profilePS5007112.698254317IPR001356Homeobox domain
SuperFamilySSF466892.27E-19255328IPR009057Homeodomain-like
SMARTSM003891.5E-13256321IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.7E-28259318IPR009057Homeodomain-like
CDDcd000863.75E-13266318No hitNo description
PfamPF059202.2E-17274313IPR008422Homeobox KN domain
PROSITE patternPS000270292315IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MDGMYGLHSS TTTDYSDKTA ALMMSPENLM FPSDYHHHQM MSSFITSDAF QNRINPLLVS  60
DDLLSAAASA ISETTASIAP PEIPRGLDED SMSTLIKAKI ASHPSYPRLL HAYIDCQKVG  120
APPEIAGLLD EIRRENDMYK GDGGAASTCV GADPELDEFM ETYCDVLLKY KSDLEKPFDE  180
ATTFLNKIEM QLRNLCTGAS VSTLSDEGAP SSDEELSGGE LEAQEAQPSS KDRDLKDRLF  240
RRFGSHISTL KLEFSKKKKK GKLPKEARQT LLEWWNVHYK WPYPTEADKI ALADSTGLDQ  300
KQINNWFINQ RKRHWKPSEN MQFAVVDNIS GQFYIDD
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29631.m001056
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002525403.10.0homeobox protein knotted-1-like 6
SwissprotQ84JS61e-157KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLB9SHD40.0B9SHD4_RICCO; Homeobox protein knotted-1, putative
STRINGXP_002525403.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-120KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]