PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29631.m001025
Common NameRCOM_0528090
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 472aa    MW: 53037.5 Da    PI: 7.7637
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29631.m001025genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.4e-12306348855
                    HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     Er+RR+ri++++ +Lr l+Pk      +K++ a+iL  A+eYI +Lq
  29631.m001025 306 TERNRRNRIKDGLYTLRALVPKI-----TKMDIASILGDAIEYIGELQ 348
                    7*********************7.....7****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.4E-1815163IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474596.41E-15296361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.691298347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.20E-11301352No hitNo description
SMARTSM003533.1E-13304353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-15305364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-9306348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MKGGNMKGLE RALELLRPFV DSKAWDYSVV WKLGDDPSRY IEWMGCCCSG GGGKVKMERG  60
EDKYSVSLCR DVYFKHPIST KACEALAGYP SSMPLYSGIH GEMVTSTQSK WITHANASSD  120
SNSYPVPIGT RVLIPVFGGL IELFAARHIA KDQKIIDYVT AHFNVLKQEA MISHGYPSFS  180
ECCIDTFREQ NFQNLTSPSH LLGLIPRTHV IYPLYQPNTH SSLEGSSSGS NPSNEHPPFD  240
SHSGYLLENG LLKQTIEKSS GPRKSKNDEN LMKQKAGLFL DRNKKKISKA IQKSERDNFP  300
SKNLVTERNR RNRIKDGLYT LRALVPKITK MDIASILGDA IEYIGELQKE KKKLEDELEG  360
IEEEECEKSN AQLPLKLEQL HEGRKPLPPV EIDNNEDSSG FGEKEKIEVQ IEVNQIGKRE  420
FLIKLFCEKK RGGFGRLMDA IYSLGLQVVD ANMTTFNGKV LNILKVEVQQ DT
Cis-element ? help Back to Top
SourceLink
PlantRegMap29631.m001025
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025014257.10.0transcription factor bHLH90 isoform X3
TrEMBLB9SHA30.0B9SHA3_RICCO; Uncharacterized protein
STRINGXP_002525372.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122653033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.13e-38bHLH family protein