PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29586.m000617
Common NameLOC8265027, RCOM_0467770
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C3H
Protein Properties Length: 313aa    MW: 34957.3 Da    PI: 8.2323
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29586.m000617genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH47.13.8e-15238263126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    +ktelC+ +++tG C+yGd C+FaHg
  29586.m000617 238 WKTELCNKWQETGMCPYGDHCQFAHG 263
                    8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.109.1E-19232270IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-11234269IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.76237265IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-9237264IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-11238263IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-9271306IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-12271304IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.169275303IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-4275302IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MEKTASPPSD PKAVSPQSKS PPQQLESSPP STHHHAQQFA TDFTTLYHSI FPPKPPALPS  60
SLSFSLTPSS TSSASATDDT EYRLQQASLI LEYQELCDHY DLCLSRLQSL SKEIDSLRQE  120
NADLRLVNND LLRLLSISSI HNRREIAEPS RFERRNNTER VMLPKSISVR SSGYLKLNPA  180
ASSSSTRPLL ASHNLDQLIS GSVHQQQRVR VAGGGGGGGG NKREEAAVEM EVYNQGMWKT  240
ELCNKWQETG MCPYGDHCQF AHGITELRPV IRHPRYKTQV CRMVVAGEVC PYGHRCHFRH  300
SLSDQERLIT GPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-20238301467Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29586.m000617
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002528071.10.0zinc finger CCCH domain-containing protein 14 isoform X2
SwissprotQ9C9N38e-89C3H14_ARATH; Zinc finger CCCH domain-containing protein 14
TrEMBLB9SQ020.0B9SQ02_RICCO; Zinc finger protein, putative
STRINGXP_002528071.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.16e-81C3H family protein