PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28345.m000111
Common NameRCOM_0233200
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 153aa    MW: 17541.3 Da    PI: 5.9418
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28345.m000111genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.6e-053557123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   y+C+ C+k Fs+   L  H++ H
  28345.m000111 35 YTCSFCKKGFSNAQALGGHMNIH 57
                   9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.1E-53359IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.62E-73361No hitNo description
PROSITE profilePS5015711.5723562IPR007087Zinc finger, C2H2
SMARTSM003550.00423557IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803757IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051973Biological Processpositive regulation of telomerase activity
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MEVNHSTIEK SDEQVIWRSS GDQQWSVATT LVRSYTCSFC KKGFSNAQAL GGHMNIHRKD  60
RAKLREAFDD ENLLSLNSMN PADDPHNHQV SEYKNLPLEY SEEGSCIPKT PYTLSTRDDA  120
RTTHTNKEET KIINRVDGEE DKKPRQLIRE STD
Cis-element ? help Back to Top
SourceLink
PlantRegMap28345.m000111
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025015539.11e-113zinc finger protein 10-like
TrEMBLB9T4241e-112B9T424_RICCO; Uncharacterized protein
STRINGXP_002532993.11e-112(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33353162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.15e-18C2H2 family protein