PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

28179.m000457

Common Name

RCOM_0187390

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

bHLH

Protein Properties

Length: 354aa MW: 39633.3 Da PI: 4.4461

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
28179.m000457	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.7	7.8e-12	187	230	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L 28179.m000457 187 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 230 589*******************66......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.491	181	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-15	184	248	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-9	187	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.3E-12	187	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.05E-5	188	234	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.0E-15	188	243	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MELSQHGFLE ELLQGPRIRD TNSGSGSSWA TFPITTAATG SSEFFTNGWN FDSFDENTSL 60 SPAPNPCSFL GFPTPTEPTF DCSFNDQTYP FFDGFTAATT TVPTEIDDHT PPFPTQEDYP 120 SMVEDEELGG LLLRSHSFEE RLSSTSCKVE LEQASNNNNN GQVFSMGLSA EKKNKSKKLE 180 GQPSKNLMAE RRRRKRLNDR LSMLRSIVPK ISKMDRTSIL GDTIDYMKEL LERINKLQEE 240 ESEDGTTEMT LMTNLNEIKP NEVLVRNSPK FNVDRREIDT RIDICCSAKP GLLLSTVNTL 300 EALGLEIQQC VISCFNDFSM QASCSEADEQ RTLISPEDIK QALFRTAGYG GRCL

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MELSQHGFLE ELLQGPRIRD TNSGSGSSWA TFPITTAATG SSEFFTNGWN FDSFDENTSL  60
SPAPNPCSFL GFPTPTEPTF DCSFNDQTYP FFDGFTAATT TVPTEIDDHT PPFPTQEDYP  120
SMVEDEELGG LLLRSHSFEE RLSSTSCKVE LEQASNNNNN GQVFSMGLSA EKKNKSKKLE  180
GQPSKNLMAE RRRRKRLNDR LSMLRSIVPK ISKMDRTSIL GDTIDYMKEL LERINKLQEE  240
ESEDGTTEMT LMTNLNEIKP NEVLVRNSPK FNVDRREIDT RIDICCSAKP GLLLSTVNTL  300
EALGLEIQQC VISCFNDFSM QASCSEADEQ RTLISPEDIK QALFRTAGYG GRCL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	189	196	ERRRRKRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	28179.m000457

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002528891.3	0.0	transcription factor bHLH93
Swissprot	Q9LSL1	2e-89	BH093_ARATH; Transcription factor bHLH93
TrEMBL	B9SSC2	0.0	B9SSC2_RICCO; DNA binding protein, putative
STRING	XP_002528891.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1186	34	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	2e-91	beta HLH protein 93

Link Out ? help Back to Top
Phytozome	28179.m000457

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]