PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28166.m001044
Common NameRCOM_0180640
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 385aa    MW: 42049.1 Da    PI: 9.8494
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28166.m001044genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.00032180202223
                    EETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                    +C++Cg+ F+ ++  ++H  + H
  28166.m001044 180 TCHKCGEQFTKWEAAENHHLSkH 202
                    7*****************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280181202IPR007087Zinc finger, C2H2
SuperFamilySSF563993.16E-16204384No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MPTVWFSLKK SLHCKSEPSD VHDPKSRKQL STILTRKAGR SGCSRSIANL KDVIHGSKRH  60
TEKPPSCSPR SIGSSEFLNP ITHEVILSNS RCELKITGFG GFQEGIGTGS GGGTNNGSGG  120
GGNSGGSTFV GTLRPGTPGP GGHPTMHYFN PSFRNSATPP RKSPFLLSDR EDANVSSTIT  180
CHKCGEQFTK WEAAENHHLS KHAVTELVEG DSSRKIVEII CRTSWLKGEN NCGRIERVLK  240
VHNMQKTLAR FEEYREMVKI KASKLPKKHP RCIADGNELL RIIRNGFSAK KELKGGIGVF  300
TTSTSGRAFE SVEIFEEDPC IRKALIVCRV IAGRVHKPLE NIQEISGQTG FDSLAGKVGL  360
YSNIEELYLL NPKALLPCFV VICKP
Cis-element ? help Back to Top
SourceLink
PlantRegMap28166.m001044
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1445026e-88AC144502.5 Medicago truncatula clone mth2-5p10, complete sequence.
GenBankBT1411786e-88BT141178.1 Medicago truncatula clone JCVI-FLMt-20C24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021606656.10.0uncharacterized protein LOC110610892
TrEMBLB9S9Z90.0B9S9Z9_RICCO; Transcription factor, putative
STRINGXP_002522818.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49831013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-110C2H2 family protein