PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28161.m000228
Common NameLOC8278063, RCOM_0178540
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 365aa    MW: 41117.1 Da    PI: 6.6906
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28161.m000228genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.82.3e-07135156223
                    EETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                     C++Cgk F+r  nL+ H+r H
  28161.m000228 135 FCEICGKGFKRDANLRMHMRAH 156
                    6*******************99 PP
2zf-C2H210.70.0017254269621
                    TTEEESSHHHHHHHHH CS
        zf-C2H2   6 CgksFsrksnLkrHir 21 
                    Cg++Fsrk+ L  H+ 
  28161.m000228 254 CGTTFSRKDKLFGHMT 269
                    **************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.16E-6131157No hitNo description
PROSITE profilePS5015711.967134161IPR007087Zinc finger, C2H2
SMARTSM003550.0015134156IPR015880Zinc finger, C2H2-like
PfamPF128740.002135154No hitNo description
Gene3DG3DSA:3.30.160.609.5E-6136158IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280136156IPR007087Zinc finger, C2H2
SMARTSM0035550184217IPR015880Zinc finger, C2H2-like
SMARTSM0035522222244IPR015880Zinc finger, C2H2-like
SMARTSM00355220250274IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MSNSGQSSRA PAANLDPRVP LLKLSMVRER MDSLQQFLSN SVNSNALMSK DEMDMVSAEI  60
STAIQQIIVN GTALLSCSQS VDKHSDLKTQ TKITNQSENK KSSLEVEDKD DLDLELDSDI  120
VEMDAVELLA EHVHFCEICG KGFKRDANLR MHMRAHGNQF KTPEALSRPD KGNEFLATGR  180
KRRFSCPYEG CNRNKKHKKF RPLKSVVCVR NHFKRSHCPK MYSCNRCKKR SFSVVADLRS  240
HLKHCGESRW RCSCGTTFSR KDKLFGHMTL FEGHMPAVVG EDEDKDKGKS GAVAVEEDEE  300
EEGGVVKGEK LIGNCMDNDL FEGLLEGFGS FDEYNLQDVF FESPSNSSNN NNNWGHDDFY  360
GFSQS
Cis-element ? help Back to Top
SourceLink
PlantRegMap28161.m000228
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002532839.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLB9T3M00.0B9T3M0_RICCO; TRANSPARENT TESTA 1 protein, putative
STRINGXP_002532839.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68553150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.37e-74C2H2 family protein