PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28077.m000081
Common NameLOC8263586, RCOM_0155810
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family Trihelix
Protein Properties Length: 491aa    MW: 53275.1 Da    PI: 8.4034
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28077.m000081genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.92e-16106195186
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergf.erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    +W++  + +L+ea++e+ ++l+rg+l++ +Weev++++        + + ++s +qCk+k++nl+kryk + ++ +   s  ss++ +++q+e
  28077.m000081 106 EWSDTAISCLLEAYKEKYKELNRGNLRGRDWEEVAEAVsergggYNGNCnKKSVEQCKNKIDNLKKRYKVELQRINT--S-GSSSWHWLKQIE 195
                    5*************************************775555444454679****************88777665..3.4568*9999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.8E-20104195No hitNo description
SMARTSM005957.2E-4114196IPR006578MADF domain
Gene3DG3DSA:3.40.1160.101.4E-69249484IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B33.599251485IPR015963Uridylate kinase, bacteria
SuperFamilySSF536337.85E-57251484IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042541.26E-115254485No hitNo description
PfamPF006966.3E-23255464IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0046939Biological Processnucleotide phosphorylation
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MATDFPLLTD PHAPPTHAPT RLRDCESISG GDYYAPYEDS EKSGSGVKTT SSSKRHRSNH  60
HHYNNSNIKK QKPNGGTGES EPNINNKATV SGAVEYRADY RKDREEWSDT AISCLLEAYK  120
EKYKELNRGN LRGRDWEEVA EAVSERGGGY NGNCNKKSVE QCKNKIDNLK KRYKVELQRI  180
NTSGSSSWHW LKQIEVIMGN SCNSKIGSGG GESSECGSGA NVNLVARPLR RYSPGNVVFA  240
SNLKAKSVPN LKWRRVVFKI SGAALAANCQ NIDPKVAMQI AREVATACHL GLEIAIVVGG  300
GNFFCGDSWI SATGLDRPMA YQIGMMATVM NSILLQSALE KLGVQTRVQS AIAMPDLVEP  360
YSRQRAIRHL EKGRVVIFGG VGAGSGNPLF TTDTAAALRA SEINAEALLK GTNVDGIYDC  420
HSGNTNVILD HIPFREVVSR GVTFMDTMAI TYCEENGIPV AVFNLLKPGN ISRALCGDQV  480
GTLIDQAGGI D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A7e-642474843239Uridylate kinase
3ek5_B7e-642474843239Uridylate kinase
3ek5_C7e-642474843239Uridylate kinase
3ek5_D7e-642474843239Uridylate kinase
3ek5_E7e-642474843239Uridylate kinase
3ek5_F7e-642474843239Uridylate kinase
3ek6_A7e-642474843239Uridylate kinase
3ek6_B7e-642474843239Uridylate kinase
3ek6_C7e-642474843239Uridylate kinase
3ek6_D7e-642474843239Uridylate kinase
3ek6_E7e-642474843239Uridylate kinase
3ek6_F7e-642474843239Uridylate kinase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap28077.m000081
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002533933.10.0uncharacterized protein LOC8263586 isoform X1
TrEMBLB9T6R40.0B9T6R4_RICCO; Uridylate kinase, putative
STRINGXP_002533933.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40623252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-168Trihelix family protein