PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

28052.m000040

Common Name

RCOM_0150170

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

MYB_related

Protein Properties

Length: 358aa MW: 38840.4 Da PI: 6.1227

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
28052.m000040	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.8	3.9e-16	14	64	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++++G g+W++ +++ +Rt++++k++w+++l 28052.m000040 14 KGPWTPEEDQKLLAYIEEHGHGSWRALPAKAAthlPKRTDNEIKNYWNTHL 64 79******************888887766666669*********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.1E-23	5	72	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.94E-16	8	74	IPR009057	Homeodomain-like
PROSITE profile	PS51294	22.825	9	68	IPR017930	Myb domain
SMART	SM00717	6.0E-15	13	66	IPR001005	SANT/Myb domain
Pfam	PF00249	8.5E-15	14	64	IPR001005	SANT/Myb domain
CDD	cd00167	9.85E-15	16	64	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MGRSPCCDKV GLKKGPWTPE EDQKLLAYIE EHGHGSWRAL PAKAATHLPK RTDNEIKNYW 60 NTHLKKRLAK MGIDPVTHKP KNDALLSSDG QSKNAANLSH MAQWESARLE AEARLVRESK 120 LRSHSFQHQL SSTGYVPASG SGSASSQPQR PLDVIKGCWN GGWSKSTDGN NNGGNGLNTG 180 IGCDLESPTS TLTYSENAPP VLNSSGIGGD NSIPMIELVG TTSGSSETGI VKEEGENQDW 240 KILGNSSHDH HQHLPPDNSV SFTSSHHHDM TISMEGPWTP ESLRLSTSSH IHADHVMEEG 300 FTNLLLNDST DRSLSDSGKE SDNSGGSGNG SDYYEDNKNY WNSILNLVNS SPSDSPMF

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MGRSPCCDKV GLKKGPWTPE EDQKLLAYIE EHGHGSWRAL PAKAATHLPK RTDNEIKNYW  60
NTHLKKRLAK MGIDPVTHKP KNDALLSSDG QSKNAANLSH MAQWESARLE AEARLVRESK  120
LRSHSFQHQL SSTGYVPASG SGSASSQPQR PLDVIKGCWN GGWSKSTDGN NNGGNGLNTG  180
IGCDLESPTS TLTYSENAPP VLNSSGIGGD NSIPMIELVG TTSGSSETGI VKEEGENQDW  240
KILGNSSHDH HQHLPPDNSV SFTSSHHHDM TISMEGPWTP ESLRLSTSSH IHADHVMEEG  300
FTNLLLNDST DRSLSDSGKE SDNSGGSGNG SDYYEDNKNY WNSILNLVNS SPSDSPMF

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269\|PubMed:17376813, ECO:0000269\|PubMed:23709630, ECO:0000269\|PubMed:24169067}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	28052.m000040

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004962	7e-35	AP004962.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT28H14, TM0141, complete sequence.
GenBank	JF754927	7e-35	JF754927.1 Lotus japonicus MIXTA-like transcription factor (MYB2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015583755.1	0.0	transcription factor MYB106
Swissprot	Q9LXF1	2e-82	MYB16_ARATH; Transcription factor MYB16
TrEMBL	B9T6W7	0.0	B9T6W7_RICCO; R2r3-myb transcription factor, putative
STRING	XP_002533986.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF835	34	127

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	5e-72	myb domain protein 16

Link Out ? help Back to Top
Phytozome	28052.m000040

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Huang BH, et al. Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae). Int J Mol Sci, 2015. 16(3): p. 5900-21 [PMID:25782156] Cui F, et al. Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation. Mol Plant, 2016. 9(6): p. 926-38 [PMID:27060495]