PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 27798.m000612 | ||||||||
Common Name | LOC8273467, RCOM_0086960 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | MYB | ||||||||
Protein Properties | Length: 390aa MW: 42330.3 Da PI: 6.192 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.1 | 3.5e-17 | 49 | 94 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v ++G ++W++Iar + gR++k+c++rw + 27798.m000612 49 KGPWSPEEDAILSRLVSKFGARNWSLIARGIS-GRSGKSCRLRWCNQ 94 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 54.5 | 2.8e-17 | 101 | 145 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T eEd +++ a++ +G++ W+ Iar ++ gRt++ +k++w++ 27798.m000612 101 RKPFTDEEDRIIAAAHAVHGNK-WAVIARLLP-GRTDNAIKNHWNST 145 789*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.325 | 44 | 99 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.4E-30 | 46 | 142 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.2E-15 | 48 | 97 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-16 | 49 | 94 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.1E-26 | 50 | 101 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.81E-14 | 51 | 93 | No hit | No description |
PROSITE profile | PS51294 | 22.049 | 100 | 150 | IPR017930 | Myb domain |
SMART | SM00717 | 3.7E-16 | 100 | 148 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-14 | 101 | 145 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-23 | 102 | 149 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.42E-12 | 103 | 146 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MDLEMKEKTV VEVDGANSGD GGGEDGSGSG DDLLLAVEKT EACSKDRVKG PWSPEEDAIL 60 SRLVSKFGAR NWSLIARGIS GRSGKSCRLR WCNQLDPAVK RKPFTDEEDR IIAAAHAVHG 120 NKWAVIARLL PGRTDNAIKN HWNSTLRRKS TVCQRTRLAS GNMDQDAYLD KAKASSEETI 180 SCGDANSFKS LEGKDVSSLD NMDDQCEEKV PSQIPSTNEA KELPTVFRPR ARFSAFNVYN 240 PVDGPEAASP CLRSVPVHGP IVQTSTADDG ICKLLDGAYC EQMVPHHCGH GCCEAQNGNS 300 KQNSLLGPEF VDSLEPPSFP SFELAAIARD ISNLAWLKSG LENNNVRVMG ETASRITPHG 360 SGHLEDSRIS GKFHFDEGKN KLRGVITNVP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-41 | 46 | 149 | 4 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00337 | DAP | Transfer from AT3G09230 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 27798.m000612 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002527890.1 | 0.0 | transcription factor MYB1 isoform X1 | ||||
Swissprot | Q42575 | 1e-104 | MYB1_ARATH; Transcription factor MYB1 | ||||
TrEMBL | B9SPH1 | 0.0 | B9SPH1_RICCO; R2r3-myb transcription factor, putative | ||||
STRING | XP_002527890.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3986 | 33 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09230.1 | 1e-107 | myb domain protein 1 |
Link Out ? help Back to Top | |
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Phytozome | 27798.m000612 |
Entrez Gene | 8273467 |
Publications ? help Back to Top | |||
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