PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 270954
Common NameC3HDZ1-2, SELMODRAFT_270954
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family HD-ZIP
Protein Properties Length: 841aa    MW: 92507.8 Da    PI: 6.1894
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
270954genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.91.5e-171571557
              SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
  Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
               ++t+eq+e+Le++++++++ps  +r+++ +      +++ rq+kvWFqNrR +ek+
    270954 15 IRYTPEQVEALERVYHECPKPSSIRRQQIVRDYpvlgNIEPRQIKVWFQNRRCREKQ 71
              689****************************************************97 PP
2START131.31.1e-411833892204
             HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXTTXX CS
   START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelqals 102
             +aee+++++++ka+ ++  W + + +++g++++ + + s++  g a+ra+g+v+ ++   v+e+l+d++ W  ++++ e++    +   g+l+l +++++a++
  270954 183 IAEETLNSFLAKATGTAVDWIQIPGMKPGPDSIGTAAISHAGAGIAARAWGLVELEPI-RVAEILKDRPSWLWDCRRLEVVGSFPTPngGTLELVYTQMYAPT 284
             7899******************************************************.8888888888************99765446************** PP

             -SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--...-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXX CS
   START 103 plvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe..sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqr 202
             +l+p Rdf+++Ry+  l++ +++++++S++   ++p   +  + Rae+lpSg+li+p ++g s +++v+h+dl+++ + ++lr+l++s+++ +++ ++ +l++
  270954 285 TLAPaRDFWTLRYTIFLEDRSLAVCERSLTGIHNKPAikNGDFERAEMLPSGFLIRPYEGGVSSIHVVDHWDLESWKVLEVLRPLYESSVILAQRVTLGALHH 387
             *******************************99999998999*****************************************************99999988 PP

             XX CS
   START 203 qc 204
             ++
  270954 388 LK 389
             75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003894.5E-151076IPR001356Homeobox domain
CDDcd000865.57E-161373No hitNo description
SuperFamilySSF466898.98E-161375IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.0E-181571IPR009057Homeodomain-like
PfamPF000463.6E-151571IPR001356Homeobox domain
PROSITE profilePS5007115.3211672IPR001356Homeobox domain
CDDcd146867.95E-465101No hitNo description
PROSITE profilePS5084821.59173400IPR002913START domain
SuperFamilySSF559612.2E-28176391No hitNo description
SMARTSM002348.3E-29182391IPR002913START domain
Gene3DG3DSA:3.30.530.201.2E-14182365IPR023393START-like domain
PfamPF018522.1E-38183389IPR002913START domain
PfamPF086702.3E-38698837IPR013978MEKHLA
SuperFamilySSF557859.54E-5745835IPR000014PAS domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 841 aa     Download sequence    Send to blast
MKVKDKSDFD TGKYIRYTPE QVEALERVYH ECPKPSSIRR QQIVRDYPVL GNIEPRQIKV  60
WFQNRRCREK QRKETSRLQS VNSSLTAMNK IIMEENERLT KHSSQLALEN QCLRQQLQQI  120
RSGGGAADPD KKSAAAADRF NDQSALALAD RSPDSEVTGG VPQHLAITPQ SPRDSSPAGL  180
LSIAEETLNS FLAKATGTAV DWIQIPGMKP GPDSIGTAAI SHAGAGIAAR AWGLVELEPI  240
RVAEILKDRP SWLWDCRRLE VVGSFPTPNG GTLELVYTQM YAPTTLAPAR DFWTLRYTIF  300
LEDRSLAVCE RSLTGIHNKP AIKNGDFERA EMLPSGFLIR PYEGGVSSIH VVDHWDLESW  360
KVLEVLRPLY ESSVILAQRV TLGALHHLKR ISQESSGEVL MRGGQQPAAL RAFSHRIARG  420
FNDAVNAFAE DGWTSDGGDD VTISINTALG AKAAGAQGGD RFCAFGGILC AKSSMLLQNV  480
PAATLIRFLR EHRSEWAGVN IASDSVSTLK IGGYGTSKGN ADEECLFPEL LEVIKMEGYG  540
NGMLPKDTVL LQLCTGYEDT ASGTCAQLVF APVDPAVSND IPLLPSGFRV IPLDNGLDAS  600
ALSRTLDLTS TLEGSADGGK FPDDFSGSGG NMRSVLTMAF QFVFEAHNRE EIIASARQYV  660
RNVMVSVQSI AMALASYRLS PPQQGPKQQE AKIFALQIMR SYSLGLQRCR ASFNVEFNES  720
QPESTDAFWH DKNAILCCTW KAIPEFIFAN RAGLEMMETT WRDLHSLPYE RTFDATGRET  780
AYSDFAQVIH QGYAYLHGGI RLSSKGHPVT YDRAMAWKVF DDDGAVVCIA FMFTDWSIVA  840
*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ6571990.0Selaginella moellendorffii class III HD-Zip protein HDZ32 mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024533017.10.0homeobox-leucine zipper protein HOX32
RefseqXP_024545142.10.0homeobox-leucine zipper protein HOX32
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLQ0Q4320.0Q0Q432_SELML; Class III HD-Zip protein HDZ32
STRINGEFJ265280.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6511671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Prigge MJ,Clark SE
    Evolution of the class III HD-Zip gene family in land plants.
    Evol. Dev., 2006 Jul-Aug. 8(4): p. 350-61
    [PMID:16805899]
  3. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  4. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]
  5. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]