PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 270225
Common NameC3HDZ2-1, SELMODRAFT_270225
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family HD-ZIP
Protein Properties Length: 856aa    MW: 93846.8 Da    PI: 6.223
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
270225genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.22.5e-172076557
              SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
  Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
               ++t+eq+e+Le++++++++ps  +r++L ++     +++ rq+kvWFqNrR +ek+
    270225 20 IRYTPEQVEALERVYNECPKPSSIRRQQLLREYpvlaNIEPRQIKVWFQNRRCREKQ 76
              689****************************************************97 PP
2START131.31.1e-411903932200
             HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXTTXX CS
   START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelqals 102
             +aee+++e+++ka  ++  W +++ +++g+++  + + s++++g a+ra+g+v  ++   v+e+l+d+  W +++++ e+l +  +   g+++l +++++a++
  270225 190 IAEETLTEFLAKARGTAVDWIQLPGMKPGPDSAGTAAISHGSTGVAARAWGLVGLEPD-KVAEILKDRSSWLRDCRRLEVLRAFPTPngGTVELVYTQMYAPT 291
             6899*****************************************************9.8888888888************99865446************** PP

             -SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHT CS
   START 103 plvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatl 200
             +l++ Rdf+++Ry+  l +gd+v+++ S++     p       +vRae+l Sg+li+p +++ + + +v+h+dl+++ +h++lr+l++s+ + ++++++ +l
  270225 292 TLAAaRDFWTLRYTTFLDEGDLVVCEKSLSGVHGLPAakaGNDFVRAEMLASGFLIRPFEGNVCSIYIVDHMDLESWKVHEVLRPLYESSSVLAQRMTLGAL 393
             ******************************9988887767889***************************************************99988766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003895.0E-141581IPR001356Homeobox domain
SuperFamilySSF466897.7E-161880IPR009057Homeodomain-like
CDDcd000861.90E-161878No hitNo description
PfamPF000466.8E-152076IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.6E-182076IPR009057Homeodomain-like
PROSITE profilePS5007115.4022177IPR001356Homeobox domain
CDDcd146869.75E-470106No hitNo description
PROSITE profilePS5084825.633180399IPR002913START domain
Gene3DG3DSA:3.30.530.204.2E-20188376IPR023393START-like domain
SMARTSM002342.7E-25189399IPR002913START domain
PfamPF018525.6E-39190393IPR002913START domain
SuperFamilySSF559611.65E-30190374No hitNo description
PfamPF086706.7E-43715853IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 856 aa     Download sequence    Send to blast
MAVMKMKDSS KHIMDAGKYI RYTPEQVEAL ERVYNECPKP SSIRRQQLLR EYPVLANIEP  60
RQIKVWFQNR RCREKQRKET SRLQSVNASL TAMNKIIMEE NERLTKHSSQ LALENQYLRQ  120
QLQQQGGSER DLKLSRRYAN DAQAALAADR SPDSEVTGGM PQQLVAASTT TTTTAPQIAR  180
DSSPAGLLAI AEETLTEFLA KARGTAVDWI QLPGMKPGPD SAGTAAISHG STGVAARAWG  240
LVGLEPDKVA EILKDRSSWL RDCRRLEVLR AFPTPNGGTV ELVYTQMYAP TTLAAARDFW  300
TLRYTTFLDE GDLVVCEKSL SGVHGLPAAK AGNDFVRAEM LASGFLIRPF EGNVCSIYIV  360
DHMDLESWKV HEVLRPLYES SSVLAQRMTL GALRFLRRLI YESPLNENAP RGAQQSAAWR  420
GVSRRIARGF NEAVNSFADD GWMITDAIDG DVTVAINVAP NASSIGGQVM PPDRLYAVGG  480
GVLCAKASML LQNVPPATLI RFLREHRSEW ADCNVVLDTA SMRASACGFS RGNVIGQCPV  540
PLVQSAEEEE FLEVVKLEGH ASGQNGVVIP RETVLLQLCS GHDDNAMGVC AQLVFAPVDA  600
AVSEDVPLLP SGFRVIPLDS GVDSSGLSRT LDLASSLEGG ADIGKFPDES GCHLRSVLTL  660
AFQFLFEAHN RDEVATSARQ YVRHVMASVQ SIAMALASFR LGPRVGPRNV EALLLAHQIL  720
RSYRANFASD LTESDPGSTD AFWHHKDAIL CCTWKAMIPE FVFANRAGLE MLETTWSELH  780
GIPWDKTLDD NARKASAAEF SQIIQQGYAC LPPGIKLSSK GRPAAYDRAV AWKVVDEEDN  840
AQCVAYMFIN WSFLG*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ6571980.0Selaginella moellendorffii class III HD-Zip protein HDZ31 mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002961227.10.0homeobox-leucine zipper protein HOX32
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLD8QNI30.0D8QNI3_SELML; Uncharacterized protein C3HDZ2-1
STRINGEFJ387660.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6511671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]
  4. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]