PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 190714
Common NameMICPUCDRAFT_53026
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family C2H2
Protein Properties Length: 281aa    MW: 29629.1 Da    PI: 10.2414
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
190714genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00043171190221
              EETTTTEEESSHHHHHHHHH CS
  zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
              +C  C+k+F++  +L  H r
   190714 171 RCDVCDKRFTSVAQLDEHER 190
              6*****************88 PP
2zf-C2H211.50.00094241257319
              ETTTTEEESSHHHHHHH CS
  zf-C2H2   3 CpdCgksFsrksnLkrH 19 
              C  C k+F++k +L  H
   190714 241 CALCRKTFTSKAQLLEH 257
              99*************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.63E-8168200No hitNo description
SMARTSM004510.75169201IPR003604Zinc finger, U1-type
PROSITE profilePS501579.432170194IPR007087Zinc finger, C2H2
SMARTSM003550.16170194IPR015880Zinc finger, C2H2-like
PfamPF128741.9E-7171194No hitNo description
PROSITE patternPS000280172194IPR007087Zinc finger, C2H2
SMARTSM004510.48236270IPR003604Zinc finger, U1-type
SuperFamilySSF576673.29E-7239269No hitNo description
SMARTSM0035523239263IPR015880Zinc finger, C2H2-like
PfamPF128743.5E-6240263No hitNo description
PROSITE patternPS000280241263IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MSPPPPGLND IDAQIAALEA KLGGAVASGS SDEDADDAAT RRRRERKRSE KKARKREKKE  60
KKRRREEKES DDDDDDDDAV AAAAESDSEL ERIAPLPSHL LPEHNAYSGK GIGRKKKRGE  120
KNAANAGTTT AAMTTTATRA GGDAGASGAA PAAAPTPALA AMIARREDMP RCDVCDKRFT  180
SVAQLDEHER GKAHLKAARA RATGGTPRDA SRRPPGAGRP AAPGKPIAGL PGPPAGAVEH  240
CALCRKTFTS KAQLLEHEGG KWHALRVRGE LPPSRRPYNA *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14155RRRERKRSEKKARKR
24564RKRSEKKARKREKKEKKRRR
35058KKARKREKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003063418.10.0predicted protein
TrEMBLC1N5T00.0C1N5T0_MICPC; Predicted protein
STRINGXP_003063418.10.0(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP844133
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]