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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | 17087 | ||||||||
| Common Name | SELMODRAFT_17087 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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| Family | AP2 | ||||||||
| Protein Properties | Length: 174aa MW: 19710.1 Da PI: 10.5959 | ||||||||
| Description | AP2 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | AP2 | 23.2 | 1.7e-07 | 1 | 50 | 8 | 55 |
AP2 8 wdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55
+++++gr++A+++d + ++ ++ k + g ++ +e+Aa+a++ a++k++g
17087 1 RHRWTGRFEAHLWDnTC-RKegQTrKGRQ-GGYDAEEKAARAYDLAALKYWG 50
5999**********333.44554536666.668888**************98 PP
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| 2 | AP2 | 51.8 | 2e-16 | 93 | 145 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
s+++GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g+
17087 93 SRFRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRGA 145
789***************988532...5*************************985 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51032 | 14.908 | 1 | 58 | IPR001471 | AP2/ERF domain |
| CDD | cd00018 | 9.27E-12 | 1 | 60 | No hit | No description |
| Gene3D | G3DSA:3.30.730.10 | 8.0E-10 | 1 | 59 | IPR001471 | AP2/ERF domain |
| SuperFamily | SSF54171 | 4.97E-11 | 1 | 59 | IPR016177 | DNA-binding domain |
| SMART | SM00380 | 3.0E-13 | 1 | 64 | IPR001471 | AP2/ERF domain |
| Pfam | PF00847 | 2.3E-5 | 1 | 50 | IPR001471 | AP2/ERF domain |
| SuperFamily | SSF54171 | 2.48E-18 | 93 | 154 | IPR016177 | DNA-binding domain |
| CDD | cd00018 | 1.45E-21 | 93 | 154 | No hit | No description |
| Pfam | PF00847 | 1.6E-10 | 93 | 144 | IPR001471 | AP2/ERF domain |
| Gene3D | G3DSA:3.30.730.10 | 3.3E-19 | 94 | 153 | IPR001471 | AP2/ERF domain |
| SMART | SM00380 | 2.5E-31 | 94 | 158 | IPR001471 | AP2/ERF domain |
| PROSITE profile | PS51032 | 18.94 | 94 | 152 | IPR001471 | AP2/ERF domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 174 aa Download sequence Send to blast |
RHRWTGRFEA HLWDNTCRKE GQTRKGRQGG YDAEEKAARA YDLAALKYWG PTTTTNFPAV 60 EYHSKLTEMK SMSRQAFVAA LRRKSSGFAR GASRFRGVTR HHQQGRWQAR IGRVAGNKDL 120 YLGTFSTEEE AAEAYDIAAI KFRGASAVTN FDMSHYDLRR ICSSPSLLLG DTAR |
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. | |||||
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. | |||||
| UniProt | Transcription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_024541956.1 | 1e-123 | AP2-like ethylene-responsive transcription factor ANT | ||||
| Swissprot | Q1PFE1 | 1e-95 | AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1 | ||||
| Swissprot | Q6PQQ3 | 4e-95 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
| Swissprot | Q6PQQ4 | 4e-95 | BBM_ARATH; AP2-like ethylene-responsive transcription factor BBM | ||||
| TrEMBL | D8SCE6 | 1e-126 | D8SCE6_SELML; Uncharacterized protein (Fragment) | ||||
| STRING | EFJ17692 | 1e-127 | (Selaginella moellendorffii) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Representative plant | OGRP112 | 17 | 209 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G72570.1 | 6e-93 | AP2 family protein | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | 17087 |
| Entrez Gene | 9658339 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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