PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

1200010153

Organism

Ostreococcus tauri

Taxonomic ID

70448

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus

Family

MYB_related

Protein Properties

Length: 427aa MW: 47027.5 Da PI: 9.978

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
1200010153	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.2	2.2e-09	370	419	2	45
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwq 45 +rWT E + l+++v+++G g W+ I++ +Rt ++k++w+ 1200010153 370 LRWTDVEVQALIRGVEKYGVGKWSYIMKDPTmfadfhPRRTSVDLKDKWR 419 69*************************99****************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	2.1E-4	368	424	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.57E-12	369	421	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.515	371	422	IPR017877	Myb-like domain
CDD	cd11660	3.92E-19	371	421	No hit	No description
Gene3D	G3DSA:1.10.10.60	8.3E-12	371	420	IPR009057	Homeodomain-like
Pfam	PF13921	9.4E-6	372	425	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
MPSSSKTAVD ARASTRAELQ RLLWALEHVL LLPDVPLASK LNVLKFVKRA SGAEASGAFD 60 EELARRGALG LVKCAERTNG FTTLTASSAS HCADDLCAYS KRRDANPSLA ARAREIAERA 120 KAEYAFGQLR LGRDGFGASP VKESEARRGK ASPVKQWRLV ENFWLRWNDV RASDMFAEDG 180 KKLVGSKTRE AYVFVEGAKK KGGKLPGSWE TVVEDPAEIL DAMGELFEDA VATFGKSFLS 240 LVVDDIQSGA YKVTMKKGLI TDSGRVNAST VEAAMQRNSK VRERLAMDAL EQSGDMFASP 300 PKKVHIAAER KANARTVEWN SQPDEGAAES PEPLATLPWD GFENTQAERT PRKRVSSPDP 360 KSPPRNGKQL RWTDVEVQAL IRGVEKYGVG KWSYIMKDPT MFADFHPRRT SVDLKDKWRV 420 IAPKMI*

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

MPSSSKTAVD ARASTRAELQ RLLWALEHVL LLPDVPLASK LNVLKFVKRA SGAEASGAFD  60
EELARRGALG LVKCAERTNG FTTLTASSAS HCADDLCAYS KRRDANPSLA ARAREIAERA  120
KAEYAFGQLR LGRDGFGASP VKESEARRGK ASPVKQWRLV ENFWLRWNDV RASDMFAEDG  180
KKLVGSKTRE AYVFVEGAKK KGGKLPGSWE TVVEDPAEIL DAMGELFEDA VATFGKSFLS  240
LVVDDIQSGA YKVTMKKGLI TDSGRVNAST VEAAMQRNSK VRERLAMDAL EQSGDMFASP  300
PKKVHIAAER KANARTVEWN SQPDEGAAES PEPLATLPWD GFENTQAERT PRKRVSSPDP  360
KSPPRNGKQL RWTDVEVQAL IRGVEKYGVG KWSYIMKDPT MFADFHPRRT SVDLKDKWRV  420
IAPKMI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A1Y5I0F7	0.0	A0A1Y5I0F7_OSTTA; Terminal acidic SANT 1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP13469	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72740.2	4e-11	MYB_related family protein