PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Phylogenetic Tree for
Castanea mollissima
M-type_MADS Family
Phylogenetic tree for domain ? help Back to Top

      Subtree rooted at node 86:

                           /---------------------------------------------- snap_masked-scaffold03320-abinit-gene-0.8-mRNA-1/9-59       (2)
                           |                                                          
                           |                                        /----- augustus_masked-scaffold00008-abinit-gene-0.1-mRNA-1/9-59   (5)
                           |                                        |                 
                           |                                   /-100+----- augustus_masked-scaffold10943-abinit-gene-0.1-mRNA-1/9-59   (9)
                           |                                   |    |                 
                           |                              /-86-+    \----- snap_masked-scaffold00008-abinit-gene-0.22-mRNA-1/9-59      (29)
                           |                              |    |                      
                           |                              |    \---------- snap_masked-scaffold02880-abinit-gene-0.12-mRNA-1/9-59      (33)
                           |                              |                           
                           |                        /--63-+         /----- augustus_masked-scaffold30221-abinit-gene-0.0-mRNA-1/9-59   (19)
                           |                        |     |         |                 
                           |                        |     |         |----- augustus_masked-scaffold11440-abinit-gene-0.0-mRNA-1/9-59   (22)
                           |                        |     \----80---+                 
                           |                   /-100+               |----- snap_masked-scaffold02091-abinit-gene-0.8-mRNA-1/9-59       (42)
                           |                   |    |               |                 
                           |                   |    |               \----- augustus_masked-scaffold06167-abinit-gene-0.0-mRNA-1/9-59   (43)
                           |              /-76-+    |                                 
                           |              |    |    \--------------------- snap_masked-scaffold02091-abinit-gene-0.4-mRNA-1/9-59       (23)
                           |              |    |                                      
                           |              |    \-------------------------- snap_masked-scaffold12475-abinit-gene-0.3-mRNA-1/9-58       (52)
                           |              |                                           
                           |              |                         /----- augustus_masked-scaffold02574-abinit-gene-0.5-mRNA-1/9-59   (12)
                           |         /-51-+                         |                 
                           |         |    |                         |----- augustus_masked-scaffold12564-abinit-gene-0.2-mRNA-1/9-59   (26)
                           |         |    |                         |                 
                     /-100-+         |    |                    /-70-+----- augustus_masked-scaffold04974-abinit-gene-0.2-mRNA-1/24-74  (30)
                     |     |         |    |                    |    |                 
                     |     |         |    |                    |    |----- augustus_masked-scaffold01572-abinit-gene-0.0-mRNA-1/9-59   (31)
                     |     |         |    \---------98---------+    |                 
                     |     |         |                         |    \----- augustus_masked-scaffold03268-abinit-gene-0.3-mRNA-1/24-74  (46)
                     |     |         |                         |                      
                     |     |         |                         \---------- snap_masked-scaffold06523-abinit-gene-0.6-mRNA-1/9-59       (41)
                     |     |         |                                                
                     |     |         |                              /----- augustus_masked-scaffold00375-abinit-gene-0.8-mRNA-1/9-59   (10)
                     |     |         |--------------100-------------+                 
                     |     |    /-51-+                              \----- maker-scaffold00195-augustus-gene-1.22-mRNA-1/10-59         (25)
                     |     |    |    |                                                
                     |     |    |    |                              /----- augustus_masked-scaffold00701-abinit-gene-0.4-mRNA-1/10-59  (11)
                     |     |    |    |--------------100-------------+                 
                     |     |    |    |                              \----- augustus_masked-scaffold04200-abinit-gene-0.0-mRNA-1/9-59   (24)
                     |     |    |    |                                                
                     |     |    |    |                    /--------------- augustus_masked-scaffold00032-abinit-gene-2.3-mRNA-1/9-57   (13)
                     |     |    |    |                    |                           
                     |     |    |    |              /--89-+    /---------- augustus_masked-scaffold00580-abinit-gene-0.7-mRNA-1/9-59   (35)
                     |     |    |    |              |     |    |                      
                     |     |    |    |              |     \-100+    /----- augustus_masked-scaffold01713-abinit-gene-0.5-mRNA-1/10-59  (38)
                     |     |    |    |              |          \-72-+                 
                     |     |    |    \------66------+               \----- augustus_masked-scaffold05095-abinit-gene-0.4-mRNA-1/9-59   (47)
                     |     |    |                   |                                 
                /-70-+     |    |                   |          /---------- augustus_masked-scaffold03567-abinit-gene-0.2-mRNA-1/9-58   (17)
                |    |     \-61-+                   |          |                      
                |    |          |                   \----51----+    /----- augustus_masked-scaffold00670-abinit-gene-0.16-mRNA-1/9-46  (28)
                |    |          |                              |    |                 
                |    |          |                              \-94-+----- augustus_masked-scaffold00375-abinit-gene-1.0-mRNA-1/9-59   (48)
                |    |          |                                   |                 
                |    |          |                                   \----- augustus_masked-scaffold00580-abinit-gene-1.0-mRNA-1/9-59   (53)
                |    |          |                                                     
                |    |          |                                   /----- snap_masked-scaffold01235-abinit-gene-0.19-mRNA-1/9-58      (6)
                |    |          |                         /----67---+                 
                |    |          |                         |         \----- maker-scaffold02077-snap-gene-0.44-mRNA-1/9-58              (20)
                |    |          |                         |                           
                |    |          |                   /--84-+    /---------- snap_masked-scaffold15396-abinit-gene-0.3-mRNA-1/9-59       (18)
                |    |          |                   |     |    |                      
                |    |          |                   |     \-81-+    /----- maker-scaffold01564-augustus-gene-0.45-mRNA-1/9-53          (40)
           /-88-+    |          \--------100--------+          \-80-+                 
           |    |    |                              |               \----- maker-scaffold02755-augustus-gene-0.17-mRNA-1/46-90         (50)
           |    |    |                              |                                 
           |    |    |                              \--------------------- snap_masked-scaffold13398-abinit-gene-0.2-mRNA-1/9-58       (27)
           |    |    |                                                                
           |    |    |                                         /---------- augustus_masked-scaffold09320-abinit-gene-0.0-mRNA-1/9-52   (16)
           |    |    |                                         |                      
           |    |    |                                    /-94-+    /----- augustus_masked-scaffold02353-abinit-gene-0.1-mRNA-1/10-51  (36)
           |    |    |                                    |    \-100+                 
           |    |    \-----------------98-----------------+         \----- augustus_masked-scaffold01482-abinit-gene-0.3-mRNA-1/4-44   (44)
           |    |                                         |                           
           |    |                                         \--------------- augustus_masked-scaffold07671-abinit-gene-0.5-mRNA-1/11-53  (49)
           |    |                                                                     
      --94-+    |--------------------------------------------------------- augustus_masked-scaffold17911-abinit-gene-0.1-mRNA-1/16-64  (32)
           |    |                                                                     
           |    \--------------------------------------------------------- augustus_masked-scaffold30392-abinit-gene-0.0-mRNA-1/19-68  (45)
           |                                                                          
           |                                                        /----- augustus_masked-scaffold00849-abinit-gene-0.12-mRNA-1/19-64 (4)
           |                                                   /-56-+                 
           |                                                   |    \----- augustus_masked-scaffold00849-abinit-gene-0.9-mRNA-1/17-61  (21)
           |                                                   |                      
           |                                                   |---------- maker-scaffold11554-augustus-gene-0.5-mRNA-1/211-254        (7)
           |                                                   |                      
           |                                                   |    /----- snap_masked-scaffold11418-abinit-gene-0.5-mRNA-1/15-61      (8)
           |                                                   |-100+                 
           \------------------------100------------------------+    \----- maker-scaffold11554-augustus-gene-0.5-mRNA-1/15-59          (51)
                                                               |                      
                                                               |---------- augustus_masked-scaffold03418-abinit-gene-0.0-mRNA-1/19-57  (15)
                                                               |                      
                                                               |---------- snap_masked-scaffold12023-abinit-gene-0.5-mRNA-1/18-64      (34)
                                                               |                      
                                                               \---------- augustus_masked-scaffold00674-abinit-gene-0.7-mRNA-1/18-61  (39)
                                                                                      
      Root part of tree:

      /------------------------------------------------------------------- augustus_masked-scaffold03391-abinit-gene-0.6-mRNA-1/26-71  (1)
      |                                                                               
      |------------------------------------------------------------------- augustus_masked-scaffold01335-abinit-gene-0.14-mRNA-1/26-71 (14)
      +                                                                               
      |                     /--------------------------------------------- (86)
      |                     |                                                         
      \---------100---------+                      /---------------------- augustus_masked-scaffold01180-abinit-gene-0.10-mRNA-1/20-63 (3)
                            \----------95----------+                                  
                                                   \---------------------- augustus_masked-scaffold02443-abinit-gene-0.5-mRNA-1/26-64  (37)
                                                                                      

Phylogenetic tree for protein ? help Back to Top

      /------------------------------------------------------------------- augustus_masked-scaffold01572-abinit-gene-0.0-mRNA-1  (1)
      |                                                                               
      |------------------------------------------------------------------- snap_masked-scaffold06523-abinit-gene-0.6-mRNA-1      (6)
      |                                                                               
      |------------------------------------------------------------------- augustus_masked-scaffold12564-abinit-gene-0.2-mRNA-1  (25)
      |                                                                               
      |------------------------------------------------------------------- snap_masked-scaffold15396-abinit-gene-0.3-mRNA-1      (44)
      |                                                                               
      |------------------------------------------------------------------- augustus_masked-scaffold02574-abinit-gene-0.5-mRNA-1  (45)
      |                                                                               
      |                                                          /-------- augustus_masked-scaffold00375-abinit-gene-0.8-mRNA-1  (2)
      |       /------------------------71------------------------+                    
      |       |                                                  \-------- maker-scaffold00195-augustus-gene-1.22-mRNA-1         (11)
      |       |                                                                       
      |       |                                                  /-------- augustus_masked-scaffold00701-abinit-gene-0.4-mRNA-1  (3)
      |       |                                         /---100--+                    
      |       |                                         |        \-------- augustus_masked-scaffold04200-abinit-gene-0.0-mRNA-1  (18)
      |       |--------------------59-------------------+                             
      |       |                                         \----------------- snap_masked-scaffold12475-abinit-gene-0.3-mRNA-1      (24)
      |       |                                                                       
      |       |                                                  /-------- augustus_masked-scaffold00008-abinit-gene-0.1-mRNA-1  (4)
      |       |                                                  |                    
      |       |                                         /---89---+-------- snap_masked-scaffold00008-abinit-gene-0.22-mRNA-1     (23)
      |       |                                         |        |                    
      |       |                                 /---64--+        \-------- augustus_masked-scaffold10943-abinit-gene-0.1-mRNA-1  (38)
      |       |                                 |       |                             
      |       |                                 |       \----------------- snap_masked-scaffold02091-abinit-gene-0.4-mRNA-1      (14)
      |       |                                 |                                     
      |       |                                 |                /-------- snap_masked-scaffold02091-abinit-gene-0.8-mRNA-1      (16)
      |       |                                 |                |                    
      |       |---------------100---------------+                |-------- augustus_masked-scaffold11440-abinit-gene-0.0-mRNA-1  (17)
      |       |                                 |-------88-------+                    
      |       |                                 |                |-------- augustus_masked-scaffold30221-abinit-gene-0.0-mRNA-1  (37)
      |       |                                 |                |                    
      |       |                                 |                \-------- augustus_masked-scaffold06167-abinit-gene-0.0-mRNA-1  (39)
      |       |                                 |                                     
      |       |                                 \------------------------- snap_masked-scaffold02880-abinit-gene-0.12-mRNA-1     (51)
      |       |                                                                       
      |       |----------------------------------------------------------- augustus_masked-scaffold00032-abinit-gene-2.3-mRNA-1  (5)
      |       |                                                                       
      |       |        /-------------------------------------------------- augustus_masked-scaffold07671-abinit-gene-0.5-mRNA-1  (7)
      |       |        |                                                              
      |       |        |                                /----------------- augustus_masked-scaffold00849-abinit-gene-0.9-mRNA-1  (8)
      |       |        |                                |                             
      |       |        |                        /--100--+        /-------- snap_masked-scaffold12023-abinit-gene-0.5-mRNA-1      (15)
      |       |        |                        |       \---100--+                    
      |       |        |                        |                \-------- augustus_masked-scaffold00849-abinit-gene-0.12-mRNA-1 (20)
      |       |        |                        |                                     
      |       |        |                /---85--+------------------------- augustus_masked-scaffold00674-abinit-gene-0.7-mRNA-1  (19)
      |       |        |                |       |                                     
      |       |        |                |       |       /----------------- augustus_masked-scaffold03418-abinit-gene-0.0-mRNA-1  (27)
      +       |        |                |       |       |                             
      |       |        |                |       \---86--+        /-------- maker-scaffold11554-augustus-gene-0.5-mRNA-1          (41)
      |       |        |                |               \---100--+                    
      |       |        |       /---53---+                        \-------- snap_masked-scaffold11418-abinit-gene-0.5-mRNA-1      (46)
      |---90--+        |       |        |                                             
      |       |---64---+       |        |                        /-------- augustus_masked-scaffold02443-abinit-gene-0.5-mRNA-1  (22)
      |       |        |       |        |               /---99---+                    
      |       |        |       |        |               |        \-------- augustus_masked-scaffold01180-abinit-gene-0.10-mRNA-1 (49)
      |       |        |       |        \------100------+                             
      |       |        |---70--+                        |        /-------- augustus_masked-scaffold01335-abinit-gene-0.14-mRNA-1 (32)
      |       |        |       |                        \---100--+                    
      |       |        |       |                                 \-------- augustus_masked-scaffold03391-abinit-gene-0.6-mRNA-1  (43)
      |       |        |       |                                                      
      |       |        |       |------------------------------------------ augustus_masked-scaffold30392-abinit-gene-0.0-mRNA-1  (10)
      |       |        |       |                                                      
      |       |        |       \------------------------------------------ augustus_masked-scaffold17911-abinit-gene-0.1-mRNA-1  (33)
      |       |        |                                                              
      |       |        |                                         /-------- augustus_masked-scaffold01482-abinit-gene-0.3-mRNA-1  (34)
      |       |        |                                /---100--+                    
      |       |        |                                |        \-------- augustus_masked-scaffold02353-abinit-gene-0.1-mRNA-1  (52)
      |       |        \---------------100--------------+                             
      |       |                                         \----------------- augustus_masked-scaffold09320-abinit-gene-0.0-mRNA-1  (42)
      |       |                                                                       
      |       |                                                  /-------- maker-scaffold02755-augustus-gene-0.17-mRNA-1         (9)
      |       |                                         /---100--+                    
      |       |                                         |        \-------- maker-scaffold01564-augustus-gene-0.45-mRNA-1         (47)
      |       |                                 /---50--+                             
      |       |                                 |       \----------------- snap_masked-scaffold13398-abinit-gene-0.2-mRNA-1      (35)
      |       |----------------98---------------+                                     
      |       |                                 |                /-------- snap_masked-scaffold01235-abinit-gene-0.19-mRNA-1     (40)
      |       |                                 \-------97-------+                    
      |       |                                                  \-------- maker-scaffold02077-snap-gene-0.44-mRNA-1             (50)
      |       |                                                                       
      |       |                                         /----------------- augustus_masked-scaffold00670-abinit-gene-0.16-mRNA-1 (12)
      |       |                                         |                             
      |       |--------------------93-------------------+        /-------- augustus_masked-scaffold00580-abinit-gene-1.0-mRNA-1  (29)
      |       |                                         \---55---+                    
      |       |                                                  \-------- augustus_masked-scaffold00375-abinit-gene-1.0-mRNA-1  (30)
      |       |                                                                       
      |       |----------------------------------------------------------- augustus_masked-scaffold03567-abinit-gene-0.2-mRNA-1  (21)
      |       |                                                                       
      |       |                                                  /-------- augustus_masked-scaffold01713-abinit-gene-0.5-mRNA-1  (28)
      |       |                                         /---89---+                    
      |       |                                         |        \-------- augustus_masked-scaffold05095-abinit-gene-0.4-mRNA-1  (48)
      |       |-------------------100-------------------+                             
      |       |                                         \----------------- augustus_masked-scaffold00580-abinit-gene-0.7-mRNA-1  (31)
      |       |                                                                       
      |       \----------------------------------------------------------- snap_masked-scaffold03320-abinit-gene-0.8-mRNA-1      (36)
      |                                                                               
      |                                                          /-------- augustus_masked-scaffold03268-abinit-gene-0.3-mRNA-1  (13)
      \----------------------------79----------------------------+                    
                                                                 \-------- augustus_masked-scaffold04974-abinit-gene-0.2-mRNA-1  (26)