PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Phylogenetic Tree for OGEM580
Phylogenetic tree for protein ? help Back to Top |
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Subtree rooted at node 187: /----- orange1.1g008078m [Citrus sinensis] (7) /-100+ | \----- Ciclev10000693m [Citrus clementina] (54) /---------------------100---------------------+ | \---------- Neem_3752_f_1 [Azadirachta indica] (61) | | /----- GSBRNA2T00099262001 [Brassica napus] (8) | /-100+ | | \----- XP_009104599.1 [Brassica rapa] (87) | /-100+ | | | /----- XP_013587957.1 [Brassica oleracea] (47) | | \-85-+ | /-100+ \----- GSBRNA2T00131843001 [Brassica napus] (65) | | | | /-81-+ \--------------- 676715028 [Sisymbrium irio] (128) | | | | /-99-+ \-------------------- Tp5g33010 [Thellungiella parvula] (126) | | | | | \------------------------- Thhalv10018331m [Eutrema salsugineum] (21) | | | | /----- GSBRNA2T00147919001 [Brassica napus] (13) | /--93-+ /-100+ | | | | \----- XP_013590621.1 [Brassica oleracea] (110) | | | /-100+ | | | | \---------- XP_009106427.1 [Brassica rapa] (23) | | \------100-----+ | | | /----- RrC15780_p1 [Raphanus raphanistrum] (44) | | \---100---+ /-69-+ | \----- Rsa1.0_03073.1_g00005.1 [Raphanus sativus] (121) | | | | | | /----- Csa07g050520.1 [Camelina sativa] (14) | | | /-86-+ | | | | \----- Csa16g042100.1 [Camelina sativa] (115) | | /-90-+ /-100+ | | | | | \---------- Csa09g084650.1 [Camelina sativa] (51) | | | | /-100+ | | | | | | /----- Carubv10019991m [Capsella rubella] (36) | | | | | \---100---+ | | | | /-96-+ \----- Cagra.0096s0050.1.p [Capsella grandiflora] (80) | | | | | | | | | | | \-------------------- Bostr.20129s0222.1.p [Boechera stricta] (180) | | | | /-97-+ | | | | | | /----- 895674 [Arabidopsis lyrata] (38) | | /-83-+ | | \--------100--------+ | | | | | | \----- AT1G77850.1 [Arabidopsis thaliana] (43) | | | | \--67-+ | | | | | /----- Araha.13488s0001.1.p [Arabidopsis halleri] (120) | | | | | | | | | | \-----------100----------+----- Cagra.24523s0002.1.p [Capsella grandiflora] (111) --82-+ | /-86-+ | | | | | | | \----- Csa02164s010.1 [Camelina sativa] (123) | | | | | | | | | \----------------------------------------- AA31G00188 [Aethionema arabicum] (91) | \-82-+ | | | \---------------------------------------------- XP_010539617.1 [Tarenaya hassleriana] (68) | | | \--------------------------------------------------- evm.model.supercontig_49.122 [Carica papaya] (58) | | /----- Gh_A05G1991 [Gossypium hirsutum] (10) | /-100+ | | \----- Cotton_A_16138_BGI-A2_v1.0 [Gossypium arboreum] (94) | | | /---100---+---------- Gorai.009G241900.1 [Gossypium raimondii] (45) | | | | | \---------- Gh_D05G3805 [Gossypium hirsutum] (55) | | | /-89-+ /---------- Gorai.010G046000.1 [Gossypium raimondii] (11) | | | | | | | /-91-+ /----- Gh_A06G0332 [Gossypium hirsutum] (88) | | | | \-100+ \----------------100----------------+ \-100+ \----- Cotton_A_18446_BGI-A2_v1.0 [Gossypium arboreum] (95) | | | \--------------- Gh_D06G0360 [Gossypium hirsutum] (122) | \------------------------- Thecc1EG035002t1 [Theobroma cacao] (125) Subtree rooted at node 213: /----- Csa11g013350.1 [Camelina sativa] (2) | /-100+----- Csa10g012470.1 [Camelina sativa] (39) | | | \----- Csa12g017140.1 [Camelina sativa] (49) /-87-+ | | /----- Carubv10004220m [Capsella rubella] (75) | \-100+ /-100+ \----- Cagra.1744s0020.1.p [Capsella grandiflora] (98) | | | \--------------- Bostr.7867s0859.1.p [Boechera stricta] (37) /-100+ | | /----- 913475 [Arabidopsis lyrata] (3) | \------91------+ | \----- AT4G30080.1 [Arabidopsis thaliana] (9) | | /----- GSBRNA2T00130264001 [Brassica napus] (17) | /-100+ | | \----- XP_013594669.1 [Brassica oleracea] (92) | /-100+ | | | /----- XP_009128129.1 [Brassica rapa] (34) | | \-100+ | /-100+ \----- GSBRNA2T00076844001 [Brassica napus] (67) | | | | | | /----- RrC1226_p4 [Raphanus raphanistrum] (22) | | \---100---+ | | \----- Rsa1.0_00897.1_g00011.1 [Raphanus sativus] (84) /-50-+ | | |-100+ /----- GSBRNA2T00086041001 [Brassica napus] (30) | | | /-100+ | | | | \----- XP_013593026.1 [Brassica oleracea] (76) | | | /-100+ | | | | | /----- XP_009137888.1 [Brassica rapa] (63) | | | | \-89-+ | | \-100+ \----- GSBRNA2T00044758001 [Brassica napus] (110) | | | | | | /----- RrC5488_p1 [Raphanus raphanistrum] (160) /-100-+ | \---100---+ | | | \----- Rsa1.0_00124.1_g00036.1 [Raphanus sativus] (116) | | | | | |------------------------- 676753500 [Sisymbrium irio] (48) | | | | | | /----- Tp7g27920 [Thellungiella parvula] (71) /-93-+ | \--------100--------+ | | | \----- Tp7g27930 [Thellungiella parvula] (86) | | | | | \------------------------------ Thhalv10024601m [Eutrema salsugineum] (130) /-93-+ | | | \------------------------------------ AA102G00149 [Aethionema arabicum] (25) | | | | /----- XP_010558677.1 [Tarenaya hassleriana] (66) /-54-+ \----------------100----------------+ | | \----- XP_010554545.1 [Tarenaya hassleriana] (114) | | | | /----- (187) | \-------------------100------------------+ | \----- Eucgr.F04380.1.p [Eucalyptus grandis] (127) | | /----- Ciclev10030860m [Citrus clementina] (18) | /-100+ | | \----- orange1.1g005482m [Citrus sinensis] (70) |-------------------100------------------+ | | /----- Neem_17933_f_1 [Azadirachta indica] (28) | \-100+ | \----- Neem_3929_f_1 [Azadirachta indica] (118) | | /----- Gh_D04G0030 [Gossypium hirsutum] (24) | /-100+ /-54-+ | \----- Gorai.012G004800.1 [Gossypium raimondii] (53) | | /---100---+ | | | | /----- Cotton_A_06107_BGI-A2_v1.0 [Gossypium arboreum] (40) | | | \-100+ | | | \----- Gh_A05G3576 [Gossypium hirsutum] (85) | | | | | /-100+ /---------- Gh_D10G2093 [Gossypium hirsutum] (73) | | | | | | | | | /-99-+ /----- Gh_A10G1836 [Gossypium hirsutum] (81) /-77-+ | | | | \-100+ | | |-----------100-----------+ \-100+ \----- Cotton_A_23397_BGI-A2_v1.0 [Gossypium arboreum] (150) | | | | | | | | | \--------------- Gorai.011G238900.1 [Gossypium raimondii] (90) | | | | | | | \------------------------- Thecc1EG043157t1 [Theobroma cacao] (190) | | | | | \--------------------------------------------------- evm.model.supercontig_53.88 [Carica papaya] (69) | | | \-------------------------------------------------------- Eucgr.G02838.1.p [Eucalyptus grandis] (124) --99-+ | /------------------------------ XP_010543398.1 [Tarenaya hassleriana] (6) | | | | /----- orange1.1g005075m [Citrus sinensis] (31) | | /-100+ | | | \----- Ciclev10011194m [Citrus clementina] (112) | | /---100---+ | | | | /----- Neem_18423_f_1 [Azadirachta indica] (41) | | | \-100+ \--------------100-------------+ | \----- Neem_23307_f_1 [Azadirachta indica] (74) | | | | /----- Gh_D09G1405 [Gossypium hirsutum] (32) | /-100+ /-95-+ | | | | \----- Gorai.006G166400.1 [Gossypium raimondii] (113) | | | /-100+ | | | | | /----- Cotton_A_24047_BGI-A2_v1.0 [Gossypium arboreum] (56) | | | | \-99-+ \-100+ \-100+ \----- Gh_A09G1401 [Gossypium hirsutum] (78) | | | \--------------- Thecc1EG022163t1 [Theobroma cacao] (50) | \------------------------- Eucgr.K01240.1.p [Eucalyptus grandis] (97) Subtree rooted at node 239: /----- (213) /----97---+ | \----- Eucgr.J00923.1.p [Eucalyptus grandis] (130) | /-------------------97-------------------+ /----- orange1.1g004896m [Citrus sinensis] (79) | | /-100+ | | | \----- Ciclev10027901m [Citrus clementina] (119) | \-100+ | | /----- Neem_4289_f_1 [Azadirachta indica] (82) | \-100+ | \----- Neem_32147_f_1 [Azadirachta indica] (93) | | /-------------------- Thhalv10016329m [Eutrema salsugineum] (16) | | | | /----- XP_013637173.1 [Brassica oleracea] (29) | | /-100+ | /-91-+ | \----- GSBRNA2T00089963001 [Brassica napus] (33) | | | /-100+ | | | | | /----- XP_009103678.1 [Brassica rapa] (52) | | | | \-100+ | /-100+ \-100+ \----- GSBRNA2T00118741001 [Brassica napus] (129) | | | | | | | \--------------- Rsa1.0_02992.1_g00004.1 [Raphanus sativus] (89) | | | | | \------------------------- Tp4g11140 [Thellungiella parvula] (117) | | /-100+ | /----- Cagra.1876s0007.1.p [Capsella grandiflora] (26) | | | /-100+ | | /--66-+ | \----- Carubv10022755m [Capsella rubella] (83) | | | | /-98-+ | | | | | | /----- AT2G28350.1 [Arabidopsis thaliana] (57) | | | | | \-61-+ | | | | /-100+ \----- 481671 [Arabidopsis lyrata] (60) | | | | | | | | | | | \--------------- Bostr.27991s0089.1.p [Boechera stricta] (99) | | /-100+ \---100---+ | | | | | /---------- Csa05g038330.1 [Camelina sativa] (27) | | | | | | | | | | \---100---+ /----- Csa16g016820.1 [Camelina sativa] (35) --93-+ | | | \-98-+ | | /-99-+ | \----- Csa07g016220.1 [Camelina sativa] (77) | | | | | | | | | \------------------------------------ KFK32306.1 [Arabis alpina] (20) | | | | | | /-100+ \----------------------------------------- AA32G00876 [Aethionema arabicum] (62) | | | | | | | | /----- XP_010521760.1 [Tarenaya hassleriana] (19) | \-97-+ \-------------------100------------------+ | | \----- XP_010557327.1 [Tarenaya hassleriana] (100) | | | \--------------------------------------------------- evm.model.supercontig_65.4 [Carica papaya] (64) | \------------------------------------------------------------- Thecc1EG042067t1 [Theobroma cacao] (96) Root part of tree: /------------------------------------------------------------------ Gh_A05G0895 [Gossypium hirsutum] (1) | |------------------------------------------------------------------ Cotton_A_07064_BGI-A2_v1.0 [Gossypium arboreum] (5) | | /-------------------------------------------- (239) | | | | /----------- Gorai.013G267100.1 [Gossypium raimondii] (4) | | /----100---+ + | | \----------- Gh_D13G2411 [Gossypium hirsutum] (59) | /----100---+ /----100---+ | | | | | /----------- Cotton_A_10518_BGI-A2_v1.0 [Gossypium arboreum] (42) | | | | \----100---+ | | | | \----------- Gh_A13G2013 [Gossypium hirsutum] (120) | | \----96----+ | | | /----------- Cotton_A_04263_BGI-A2_v1.0 [Gossypium arboreum] (15) | | | /----100---+ \----100---+ | | \----------- Gh_A03G0274 [Gossypium hirsutum] (140) | \----100---+ | | /----------- Gh_D03G1293 [Gossypium hirsutum] (46) | \----100---+ | \----------- Gorai.003G142500.1 [Gossypium raimondii] (170) | | /----------- Gorai.009G107800.1 [Gossypium raimondii] (12) \--------------------100--------------------+ \----------- Gh_D05G0978 [Gossypium hirsutum] (72) |