PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Phylogenetic Tree for OGEM3461
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Subtree rooted at node 113: /----- Gh_D05G1709 [Gossypium hirsutum] (2) /-100+ | \----- Gorai.009G187500.1 [Gossypium raimondii] (10) /-100+ | | /----- Cotton_A_04599_BGI-A2_v1.0 [Gossypium arboreum] (16) | \-100+ | \----- Gh_A05G1538 [Gossypium hirsutum] (19) /-100-+ | | /----- Gorai.002G115800.1 [Gossypium raimondii] (22) | | /-100+ | | | \----- Gh_D01G0872 [Gossypium hirsutum] (29) | \-100+ /-100+ | /----- Gh_A01G0844 [Gossypium hirsutum] (35) | | \-100+ | | \----- Cotton_A_12652_BGI-A2_v1.0 [Gossypium arboreum] (54) | | | \--------------------- Thecc1EG034391t1 [Theobroma cacao] (43) /-100+ | | /--------------- Eucgr.F01779.1.p [Eucalyptus grandis] (25) | | | | | | /----- Ciclev10000186m [Citrus clementina] (31) | \----100---+ /-100+ /-100+ | | \----- orange1.1g002317m [Citrus sinensis] (55) | | \-100+ | | \---------- Neem_6777_f_4 [Azadirachta indica] (63) | | /---100---+ \------------------------------- evm.model.supercontig_26.186 [Carica papaya] (44) | | | | /----- XP_010536471.1 [Tarenaya hassleriana] (13) | \--------------100-------------+ | \----- XP_010534200.1 [Tarenaya hassleriana] (50) | | /-------------------------- Tp5g31480 [Thellungiella parvula] (5) | | | | /----- Rsa1.0_00253.1_g00001.1 [Raphanus sativus] (6) | | /---100---+ | | | \----- RrC1555_p2 [Raphanus raphanistrum] (7) | /-99-+ | | | | /-100-+ /----- GSBRNA2T00146615001 [Brassica napus] (26) | | | | | /-100+ | | | | | | \----- XP_009106294.1 [Brassica rapa] (45) | | | | \-100+ | | \-100+ | /----- XP_013592002.1 [Brassica oleracea] (51) /-100-+ /-93-+ | \-100+ | | | | | \----- GSBRNA2T00147758001 [Brassica napus] (56) | | | | | | | | | \--------------------- 676741406 [Sisymbrium irio] (27) | | | | | | | \------------------------------- Thhalv10018128m [Eutrema salsugineum] (40) | | | | | | /----- Cagra.0799s0105.1.p [Capsella grandiflora] (8) | | | /------100------+ | | /-100+ | \----- Carubv10019812m [Capsella rubella] (30) | | | | | | | | | | /----- Csa09g081060.1 [Camelina sativa] (33) | | | | /-100+ /-100+ | | | | | | | \----- Csa07g047890.1 [Camelina sativa] (38) /-100+ | | | | | /-100+ | | | | | | | | \---------- Csa16g040470.1 [Camelina sativa] (47) | | | | | | \--91-+ | | \-100+ \---100---+ \--------------- Bostr.20129s0072.1.p [Boechera stricta] (59) | | | | | | | | /----- 476788 [Arabidopsis lyrata] (18) | | | | /-100+ | | | | | \----- Araha.14524s0004.1.p [Arabidopsis halleri] (61) | | | \------100------+ | | | \---------- AT1G76350.1 [Arabidopsis thaliana] (32) | | | | | \----------------------------------------- AA31G00330 [Aethionema arabicum] (12) /-100+ | | | \---------------------------------------------------- AA39G00301 [Aethionema arabicum] (52) | | | | /----- 472297 [Arabidopsis lyrata] (11) | | /-100+ | | | \----- Araha.1089s0003.1.p [Arabidopsis halleri] (46) | | /------100------+ | | | \---------- AT1G20640.1 [Arabidopsis thaliana] (42) | | | | | | /---------- Csa14g025820.1 [Camelina sativa] (17) | | | | | | | /-100+ /----- Csa17g026440.1 [Camelina sativa] (41) | \--------------100-------------+ | \-95-+ | | | \----- Csa03g024450.1 [Camelina sativa] (48) | | /--98-+ --62-+ | | | /----- Carubv10008300m [Capsella rubella] (20) | | | \---100---+ | \-88-+ \----- Cagra.6160s0032.1.p [Capsella grandiflora] (53) | | | \--------------------- Bostr.7128s0657.1.p [Boechera stricta] (62) | | /----- 676712676 [Sisymbrium irio] (3) |---------------------------100--------------------------+ | \----- Thhalv10006790m [Eutrema salsugineum] (36) | | /----- RrC5947_p2 [Raphanus raphanistrum] (14) | /---100---+ | | \----- Rsa1.0_00803.1_g00016.1 [Raphanus sativus] (28) | | \----------------------100---------------------+ /----- XP_013585973.1 [Brassica oleracea] (24) | /-100+ | | \----- GSBRNA2T00047778001 [Brassica napus] (39) \-100+ | /----- XP_009149543.1 [Brassica rapa] (57) \-100+ \----- GSBRNA2T00043209001 [Brassica napus] (58) Root part of tree: /------------------------------------------------------------------- GSBRNA2T00050615001 [Brassica napus] (1) | |------------------------------------------------------------------- XP_013598530.1 [Brassica oleracea] (23) | | /----------- (113) | /---------------100---------------+ | | \----------- Tp1g18360 [Thellungiella parvula] (34) + | | | /----------- Rsa1.0_00034.1_g00022.1 [Raphanus sativus] (9) | /----100---+ /---------100---------+ | | | | \----------- RrC3108_p1 [Raphanus raphanistrum] (15) | | | | | | \----100----+ /---------------------- GSBRNA2T00102832001 [Brassica napus] (21) | | | | \----100---+ \----100---+ /----------- GSBRNA2T00054985001 [Brassica napus] (37) | \----100---+ | \----------- XP_013600358.1 [Brassica oleracea] (49) | | /----------- XP_009103332.1 [Brassica rapa] (4) \---------------------100--------------------+ \----------- GSBRNA2T00112338001 [Brassica napus] (60) |