PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Phylogenetic Tree for OGEM2632
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Subtree rooted at node 126: /----- Rsa1.0_00050.1_g00030.1 [Raphanus sativus] (2) /---100---+ | \----- RrC329_p3 [Raphanus raphanistrum] (39) | /-100-+ /----- XP_009115302.1 [Brassica rapa] (7) | | /-100+ | | | \----- GSBRNA2T00074286001 [Brassica napus] (41) | \-91-+ /-99-+ | /----- XP_013584285.1 [Brassica oleracea] (31) | | \-100+ | | \----- GSBRNA2T00142385001 [Brassica napus] (40) | | | \--------------------- 676760282 [Sisymbrium irio] (20) /-91-+ | | /----- XP_009103061.1 [Brassica rapa] (43) | | /-100+ | | | \----- GSBRNA2T00024886001 [Brassica napus] (47) | \------100------+ /-100+ | /----- XP_013596475.1 [Brassica oleracea] (56) | | \-100+ | | \----- GSBRNA2T00117331001 [Brassica napus] (62) /-95-+ | | | \------------------------------- Tp1g22880 [Thellungiella parvula] (59) | | | \------------------------------------ Thhalv10008403m [Eutrema salsugineum] (49) | | /----- Carubv10010865m [Capsella rubella] (5) | /-100+ | | \----- Cagra.2231s0026.1.p [Capsella grandiflora] (25) /-86-+ | | | | /----- Csa14g034100.1 [Camelina sativa] (6) | | | | | | /-100+-100+----- Csa17g035180.1 [Camelina sativa] (51) | | | | | | | | | \----- Csa03g029790.1 [Camelina sativa] (64) | | | | /-100-+ \-----------100-----------+ \---------- Bostr.12659s0423.1.p [Boechera stricta] (35) | | | | | | /----- AT1G25340.1 [Arabidopsis thaliana] (52) | | \---100---+ | | \----- Araha.5748s0003.1.p [Arabidopsis halleri] (63) | | | \---------------------------------------------- KFK44510.1 [Arabis alpina] (27) | | /---------- XP_009105051.1 [Brassica rapa] (3) | | | | /----- GSBRNA2T00088169001 [Brassica napus] (15) | /-100+-99-+ | | | \----- XP_013590797.1 [Brassica oleracea] (57) | | | | /-100-+ \---------- GSBRNA2T00093687001 [Brassica napus] (28) | | | | | | /----- Rsa1.0_02197.1_g00006.1 [Raphanus sativus] (66) | | \---100---+ | | \----- RrC594_p5 [Raphanus raphanistrum] (71) | /-92-+ | | | /----- XP_009127621.1 [Brassica rapa] (16) | | | /-93-+ /-72-+ | | | \----- GSBRNA2T00070235001 [Brassica napus] (37) | | | \----100---+ | | /------64------+ | /----- XP_013619583.1 [Brassica oleracea] (24) | | | | \-100+ | | | | \----- GSBRNA2T00013352001 [Brassica napus] (68) | | | | | | | \-------------------------- 676738762 [Sisymbrium irio] (23) | | | | | | /----- Carubv10021411m [Capsella rubella] (9) | | | /---100---+ | | | | \----- Cagra.1111s0025.1.p [Capsella grandiflora] (60) | | | | | | | /-100-+ /---------- Csa07g033940.1 [Camelina sativa] (19) | | | | | | | | | | \-100+ /----- Csa16g028340.1 [Camelina sativa] (53) | | | /-99-+ \-52-+ | | | | | \----- Csa05g084650.1 [Camelina sativa] (54) | | | | | | | | | \--------------------- Bostr.26959s0063.1.p [Boechera stricta] (61) | | | /-100+ | | | | | /---------- AT1G68320.1 [Arabidopsis thaliana] (12) | | | | | | | \----100---+ | \------100------+ /----- 339072 [Arabidopsis lyrata] (36) /-100+ | /-91-+ \-100+ | | | | | \----- Araha.2822s0001.1.p [Arabidopsis halleri] (70) | | | | | | | |-50-+ \------------------------------- KFK41242.1 [Arabis alpina] (29) | | | | | | | \------------------------------------ Tp5g23370 [Thellungiella parvula] (44) | | | | | | /----- XP_009105377.1 [Brassica rapa] (10) | | | /-100+ | | | | \----- GSBRNA2T00102070001 [Brassica napus] (30) | | | /-100+ | | | | | /----- XP_013590572.1 [Brassica oleracea] (38) | | | | \-100+ | | |-----------100-----------+ \----- GSBRNA2T00113102001 [Brassica napus] (69) | | | | | | | | /----- RrC117_p9 [Raphanus raphanistrum] (13) | | | \---100---+ | | | \----- Rsa1.0_00920.1_g00028.1 [Raphanus sativus] (50) | | | --100+ | \----------------------------------------- Thhalv10018962m [Eutrema salsugineum] (14) | | | | /----- XP_010551244.1 [Tarenaya hassleriana] (8) | \------------------------100------------------------+ | \----- XP_010532345.1 [Tarenaya hassleriana] (67) | | /----- orange1.1g021188m [Citrus sinensis] (4) | /-100+ | | \----- Ciclev10015986m [Citrus clementina] (17) | /----77----+ | | \---------- evm.model.supercontig_49.71 [Carica papaya] (34) | | | | /----- Gh_D01G1815 [Gossypium hirsutum] (18) | | /-99-+ | /-82-+ | \----- Gorai.002G218600.1 [Gossypium raimondii] (33) | | | /-100+ | | | | | /----- Cotton_A_27019_BGI-A2_v1.0 [Gossypium arboreum] (26) | | | | \-100+ | | \-100-+ \----- Gh_A01G1564 [Gossypium hirsutum] (32) \-----------------51----------------+ | | \--------------- Thecc1EG009642t1 [Theobroma cacao] (46) | |-------------------------- Eucgr.B03006.1.p [Eucalyptus grandis] (42) | \-------------------------- evm.model.supercontig_798.1 [Carica papaya] (48) Root part of tree: /------------------------------------------------------------------- Cotton_A_36850_BGI-A2_v1.0 [Gossypium arboreum] (1) | |------------------------------------------------------------------- Gh_A09G0478 [Gossypium hirsutum] (45) | | /---------------------------------------- (126) | | + | /------------- orange1.1g020603m [Citrus sinensis] (22) | /-----100-----+ /-----100-----+ | | | | \------------- Ciclev10021150m [Citrus clementina] (65) | | \-----99-----+ | | | /------------- evm.model.supercontig_3.502 [Carica papaya] (55) \-----83-----+ \-----100-----+ | \------------- evm.model.supercontig_3.501 [Carica papaya] (58) | | /------------- Gorai.006G060300.1 [Gossypium raimondii] (11) \-------------------100------------------+ \------------- Gh_D09G0485 [Gossypium hirsutum] (21) |