PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Phylogenetic Tree for OGEM2498
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Subtree rooted at node 136: /----- Cagra.0050s0032.1.p [Capsella grandiflora] (3) /-100+ | \----- Carubv10023896m [Capsella rubella] (60) /-66-+ | \---------- Bostr.25993s0098.1.p [Boechera stricta] (48) | /-100-+ /----- Csa05g002480.1 [Camelina sativa] (4) | | /-99-+ | | | \----- Csa04g065790.1 [Camelina sativa] (42) | \-100+ | \---------- Csa06g053190.1 [Camelina sativa] (68) | /---------98--------+ /----- 904139 [Arabidopsis lyrata] (27) | | /-100+ | | | \----- 904137 [Arabidopsis lyrata] (66) | | /-100+ | | | \---------- Araha.3284s0009.1.p [Arabidopsis halleri] (61) | \-100-+ | \--------------- AT2G46680.1 [Arabidopsis thaliana] (55) | | /-------------------------- 676734764 [Sisymbrium irio] (6) | | | | /--------------- GSBRNA2T00073178001 [Brassica napus] (10) | | | | /-100+ /-100-+ /---------- XP_013631726.1 [Brassica oleracea] (20) | | | | | | /-97-+ | | | \-97-+ /----- GSBRNA2T00132920001 [Brassica napus] (30) | | | | | \-100+ | | | \-100+ \----- XP_009142615.1 [Brassica rapa] (46) | | | | | | | | /----- Rsa1.0_00315.1_g00008.1 [Raphanus sativus] (34) | | /-100+ \------100------+ | | | | \----- RrC14295_p1 [Raphanus raphanistrum] (58) | | | | | | | | /--------------------- Tp4g28720 [Thellungiella parvula] (13) | | | | | | | | | | /----- Rsa1.0_00853.1_g00002.1 [Raphanus sativus] (36) /-100-+ | | \---100---+ /---100---+ | | | | | | \----- RrC14541_p1 [Raphanus raphanistrum] (74) | | \-88-+ | | | | | \--99-+ /----- XP_013633906.1 [Brassica oleracea] (64) | | | | /-100+ | | | | | \----- GSBRNA2T00037243001 [Brassica napus] (67) | | | \-100+ /-100+ | | \---------- XP_009142436.1 [Brassica rapa] (65) | | | | | | | \------------------------------------ Thhalv10001600m [Eutrema salsugineum] (18) | | | | | \---------------------------------------------- KFK37424.1 [Arabis alpina] (37) | | | \---------------------------------------------------- AA21G00398 [Aethionema arabicum] (7) | | /----- Rsa1.0_01748.1_g00004.1 [Raphanus sativus] (5) | /---100---+ | | \----- RrC4816_p1 [Raphanus raphanistrum] (40) | | | /-100-+ /----- XP_013631796.1 [Brassica oleracea] (15) | | | /-100+ | | | | \----- GSBRNA2T00016893001 [Brassica napus] (45) | | \-100+ | /-88-+ | /----- XP_009138744.1 [Brassica rapa] (31) | | | \-94-+ | | | \----- GSBRNA2T00149282001 [Brassica napus] (50) | | | | | \--------------------- Tp5g01460 [Thellungiella parvula] (47) | | | | /----- Rsa1.0_02677.1_g00005.1 [Raphanus sativus] (12) | /-96-+ /---100---+ | | | | \----- RrC6305_p1 [Raphanus raphanistrum] (69) /-100+ | | | | | | | /-100-+ /----- XP_009116857.1 [Brassica rapa] (43) | | | | | | /-100+ | | | | | | | \----- GSBRNA2T00022771001 [Brassica napus] (51) | | | | | \-89-+ | | /-96-+ \-100+ | /----- XP_013602049.1 [Brassica oleracea] (44) | | | | | \-100+ | | | | | \----- GSBRNA2T00127041001 [Brassica napus] (72) | | | | | | | | | \--------------------- 676749196 [Sisymbrium irio] (22) | | | | | | | | /----- KFK35376.1 [Arabis alpina] (41) | | | \------------86-----------+ | | | \----- Thhalv10006221m [Eutrema salsugineum] (57) | | | | | | /---------- Csa05g094080.1 [Camelina sativa] (9) | | /-100+ | | | | | /-100+ /----- Csa16g002770.1 [Camelina sativa] (23) --100+ | | | | \-61-+ | | | | | \----- Csa07g002710.1 [Camelina sativa] (59) | | | | /--68-+ | | | | | | /----- Cagra.0483s0055.1.p [Capsella grandiflora] (21) | | | | | \---100---+ | | | | /-100+ \----- Carubv10017952m [Capsella rubella] (49) | | | | | | | \------100------+ | | \--------------------- Bostr.13158s0194.1.p [Boechera stricta] (63) | | | | | | \----99---+ /----- 486694 [Arabidopsis lyrata] (29) | | | /-95-+ | | | | \----- Araha.7206s0001.1.p [Arabidopsis halleri] (33) | | \------100------+ | | \---------- AT3G61890.1 [Arabidopsis thaliana] (53) | | | \----------------------------------------- AA61G00546 [Aethionema arabicum] (62) | | /----- XP_010544870.1 [Tarenaya hassleriana] (8) \---------------------------100--------------------------+ \----- XP_010559143.1 [Tarenaya hassleriana] (25) Root part of tree: /------------------------------------------------------------------- Ciclev10021877m [Citrus clementina] (1) | |------------------------------------------------------------------- orange1.1g025886m [Citrus sinensis] (26) | | /----------------- Cotton_A_25888_BGI-A2_v1.0 [Gossypium arboreum] (2) | | | |----------------- Gh_A12G1033 [Gossypium hirsutum] (32) | /-----------100----------+ | | | /-------- Gorai.008G128000.1 [Gossypium raimondii] (52) | | \---99---+ | | \-------- Gh_D12G1152 [Gossypium hirsutum] (54) | | | | /----------------- Cotton_A_32300_BGI-A2_v1.0 [Gossypium arboreum] (11) | | | | | | /-------- Gh_D07G1346 [Gossypium hirsutum] (14) | | /--100--+---100--+ + /--100--+ | | \-------- Gorai.001G152200.1 [Gossypium raimondii] (24) | | | | | | | | | \----------------- Gh_A07G1237 [Gossypium hirsutum] (39) | | | /---52--+ | | | | | /-------- Gh_D11G1052 [Gossypium hirsutum] (17) | | | | | /---74---+ | | | | | | \-------- Gorai.007G111400.1 [Gossypium raimondii] (56) | | | | \--100--+ | | \---59---+ | /-------- Cotton_A_35320_BGI-A2_v1.0 [Gossypium arboreum] (28) | /---100--+ | \---71---+ | | | | \-------- Gh_A11G0906 [Gossypium hirsutum] (38) | | | | | | | \--------------------------------- Thecc1EG005074t1 [Theobroma cacao] (71) | | | | | | /------------------------- (136) | | | | \--100--+ | | /-------- EcC002932.10 [Eucalyptus camaldulensis] (16) | \-----------92-----------+ /---100--+ | | | \-------- Eucgr.D02645.1.p [Eucalyptus grandis] (19) | \---88--+ | \----------------- evm.model.supercontig_144.7 [Carica papaya] (73) | | /-------- Neem_28142_f_1 [Azadirachta indica] (35) \------------------------100-----------------------+ \-------- Neem_1623_f_1 [Azadirachta indica] (70) |