PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Rosa multiflora
FAR1 Family
Species TF ID Description
Rmu_co7984152.1_g000001.1FAR1 family protein
Rmu_co8043568.1_g000001.1FAR1 family protein
Rmu_co8058120.1_g000001.1FAR1 family protein
Rmu_co8131344.1_g000001.1FAR1 family protein
Rmu_co8276569.1_g000001.1FAR1 family protein
Rmu_co8349065.1_g000001.1FAR1 family protein
Rmu_co8352885.1_g000001.1FAR1 family protein
Rmu_co8418271.1_g000001.1FAR1 family protein
Rmu_co8454661.1_g000001.1FAR1 family protein
Rmu_sc0000041.1_g000017.1FAR1 family protein
Rmu_sc0000077.1_g000044.1FAR1 family protein
Rmu_sc0000114.1_g000020.1FAR1 family protein
Rmu_sc0000221.1_g000020.1FAR1 family protein
Rmu_sc0000258.1_g000040.1FAR1 family protein
Rmu_sc0000260.1_g000019.1FAR1 family protein
Rmu_sc0000279.1_g000050.1FAR1 family protein
Rmu_sc0000283.1_g000004.1FAR1 family protein
Rmu_sc0000308.1_g000038.1FAR1 family protein
Rmu_sc0000309.1_g000036.1FAR1 family protein
Rmu_sc0000365.1_g000062.1FAR1 family protein
Rmu_sc0000382.1_g000008.1FAR1 family protein
Rmu_sc0000429.1_g000038.1FAR1 family protein
Rmu_sc0000429.1_g000061.1FAR1 family protein
Rmu_sc0000528.1_g000025.1FAR1 family protein
Rmu_sc0000538.1_g000060.1FAR1 family protein
Rmu_sc0000685.1_g000014.1FAR1 family protein
Rmu_sc0000837.1_g000065.1FAR1 family protein
Rmu_sc0000894.1_g000068.1FAR1 family protein
Rmu_sc0000913.1_g000004.1FAR1 family protein
Rmu_sc0000931.1_g000006.1FAR1 family protein
Rmu_sc0000996.1_g000006.1FAR1 family protein
Rmu_sc0000998.1_g000003.1FAR1 family protein
Rmu_sc0001036.1_g000026.1FAR1 family protein
Rmu_sc0001095.1_g000002.1FAR1 family protein
Rmu_sc0001103.1_g000027.1FAR1 family protein
Rmu_sc0001167.1_g000007.1FAR1 family protein
Rmu_sc0001385.1_g000003.1FAR1 family protein
Rmu_sc0001436.1_g000002.1FAR1 family protein
Rmu_sc0001541.1_g000005.1FAR1 family protein
Rmu_sc0001634.1_g000004.1FAR1 family protein
Rmu_sc0001665.1_g000048.1FAR1 family protein
Rmu_sc0001719.1_g000008.1FAR1 family protein
Rmu_sc0001719.1_g000010.1FAR1 family protein
Rmu_sc0001814.1_g000033.1FAR1 family protein
Rmu_sc0001826.1_g000003.1FAR1 family protein
Rmu_sc0001828.1_g000008.1FAR1 family protein
Rmu_sc0001833.1_g000013.1FAR1 family protein
Rmu_sc0001836.1_g000051.1FAR1 family protein
Rmu_sc0001849.1_g000001.1FAR1 family protein
Rmu_sc0001955.1_g000017.1FAR1 family protein
Rmu_sc0001974.1_g000022.1FAR1 family protein
Rmu_sc0002079.1_g000009.1FAR1 family protein
Rmu_sc0002091.1_g000004.1FAR1 family protein
Rmu_sc0002106.1_g000008.1FAR1 family protein
Rmu_sc0002113.1_g000006.1FAR1 family protein
Rmu_sc0002147.1_g000004.1FAR1 family protein
Rmu_sc0002200.1_g000013.1FAR1 family protein
Rmu_sc0002206.1_g000012.1FAR1 family protein
Rmu_sc0002226.1_g000025.1FAR1 family protein
Rmu_sc0002268.1_g000017.1FAR1 family protein
Rmu_sc0002279.1_g000014.1FAR1 family protein
Rmu_sc0002283.1_g000033.1FAR1 family protein
Rmu_sc0002312.1_g000012.1FAR1 family protein
Rmu_sc0002329.1_g000037.1FAR1 family protein
Rmu_sc0002478.1_g000014.1FAR1 family protein
Rmu_sc0002489.1_g000048.1FAR1 family protein
Rmu_sc0002515.1_g000008.1FAR1 family protein
Rmu_sc0002531.1_g000064.1FAR1 family protein
Rmu_sc0002564.1_g000015.1FAR1 family protein
Rmu_sc0002717.1_g000004.1FAR1 family protein
Rmu_sc0002755.1_g000002.1FAR1 family protein
Rmu_sc0002791.1_g000004.1FAR1 family protein
Rmu_sc0002798.1_g000008.1FAR1 family protein
Rmu_sc0002831.1_g000006.1FAR1 family protein
Rmu_sc0002831.1_g000036.1FAR1 family protein
Rmu_sc0002868.1_g000027.1FAR1 family protein
Rmu_sc0002902.1_g000037.1FAR1 family protein
Rmu_sc0002985.1_g000008.1FAR1 family protein
Rmu_sc0003044.1_g000040.1FAR1 family protein
Rmu_sc0003047.1_g000010.1FAR1 family protein
Rmu_sc0003063.1_g000011.1FAR1 family protein
Rmu_sc0003179.1_g000016.1FAR1 family protein
Rmu_sc0003226.1_g000022.1FAR1 family protein
Rmu_sc0003226.1_g000028.1FAR1 family protein
Rmu_sc0003264.1_g000024.1FAR1 family protein
Rmu_sc0003275.1_g000010.1FAR1 family protein
Rmu_sc0003404.1_g000006.1FAR1 family protein
Rmu_sc0003511.1_g000007.1FAR1 family protein
Rmu_sc0003550.1_g000012.1FAR1 family protein
Rmu_sc0003558.1_g000007.1FAR1 family protein
Rmu_sc0003565.1_g000022.1FAR1 family protein
Rmu_sc0003576.1_g000008.1FAR1 family protein
Rmu_sc0003720.1_g000023.1FAR1 family protein
Rmu_sc0003850.1_g000002.1FAR1 family protein
Rmu_sc0003862.1_g000023.1FAR1 family protein
Rmu_sc0003976.1_g000006.1FAR1 family protein
Rmu_sc0004345.1_g000014.1FAR1 family protein
Rmu_sc0004350.1_g000004.1FAR1 family protein
Rmu_sc0004399.1_g000009.1FAR1 family protein
Rmu_sc0004406.1_g000014.1FAR1 family protein
Rmu_sc0004482.1_g000011.1FAR1 family protein
Rmu_sc0004564.1_g000003.1FAR1 family protein
Rmu_sc0004702.1_g000008.1FAR1 family protein
Rmu_sc0004821.1_g000010.1FAR1 family protein
Rmu_sc0004888.1_g000041.1FAR1 family protein
Rmu_sc0005030.1_g000002.1FAR1 family protein
Rmu_sc0005065.1_g000006.1FAR1 family protein
Rmu_sc0005117.1_g000017.1FAR1 family protein
Rmu_sc0005198.1_g000003.1FAR1 family protein
Rmu_sc0005223.1_g000019.1FAR1 family protein
Rmu_sc0005394.1_g000009.1FAR1 family protein
Rmu_sc0005399.1_g000009.1FAR1 family protein
Rmu_sc0005507.1_g000039.1FAR1 family protein
Rmu_sc0005580.1_g000009.1FAR1 family protein
Rmu_sc0005599.1_g000031.1FAR1 family protein
Rmu_sc0005607.1_g000012.1FAR1 family protein
Rmu_sc0005685.1_g000027.1FAR1 family protein
Rmu_sc0005697.1_g000005.1FAR1 family protein
Rmu_sc0005697.1_g000011.1FAR1 family protein
Rmu_sc0005712.1_g000027.1FAR1 family protein
Rmu_sc0005964.1_g000004.1FAR1 family protein
Rmu_sc0006005.1_g000001.1FAR1 family protein
Rmu_sc0006326.1_g000035.1FAR1 family protein
Rmu_sc0006475.1_g000009.1FAR1 family protein
Rmu_sc0006572.1_g000002.1FAR1 family protein
Rmu_sc0006599.1_g000001.1FAR1 family protein
Rmu_sc0006675.1_g000007.1FAR1 family protein
Rmu_sc0007180.1_g000003.1FAR1 family protein
Rmu_sc0007367.1_g000010.1FAR1 family protein
Rmu_sc0007451.1_g000006.1FAR1 family protein
Rmu_sc0007475.1_g000011.1FAR1 family protein
Rmu_sc0007586.1_g000004.1FAR1 family protein
Rmu_sc0007609.1_g000001.1FAR1 family protein
Rmu_sc0007705.1_g000009.1FAR1 family protein
Rmu_sc0007739.1_g000022.1FAR1 family protein
Rmu_sc0007974.1_g000005.1FAR1 family protein
Rmu_sc0008380.1_g000003.1FAR1 family protein
Rmu_sc0008921.1_g000017.1FAR1 family protein
Rmu_sc0009650.1_g000010.1FAR1 family protein
Rmu_sc0010172.1_g000001.1FAR1 family protein
Rmu_sc0010963.1_g000005.1FAR1 family protein
Rmu_sc0010971.1_g000001.1FAR1 family protein
Rmu_sc0011073.1_g000003.1FAR1 family protein
Rmu_sc0011079.1_g000009.1FAR1 family protein
Rmu_sc0011091.1_g000001.1FAR1 family protein
Rmu_sc0011109.1_g000005.1FAR1 family protein
Rmu_sc0011355.1_g000001.1FAR1 family protein
Rmu_sc0011992.1_g000009.1FAR1 family protein
Rmu_sc0012046.1_g000001.1FAR1 family protein
Rmu_sc0012046.1_g000002.1FAR1 family protein
Rmu_sc0012557.1_g000002.1FAR1 family protein
Rmu_sc0012710.1_g000001.1FAR1 family protein
Rmu_sc0013199.1_g000005.1FAR1 family protein
Rmu_sc0015238.1_g000001.1FAR1 family protein
Rmu_sc0016175.1_g000001.1FAR1 family protein
Rmu_sc0016898.1_g000001.1FAR1 family protein
Rmu_sc0017289.1_g000001.1FAR1 family protein
Rmu_sc0019167.1_g000001.1FAR1 family protein
Rmu_sc0020744.1_g000001.1FAR1 family protein
Rmu_sc0020815.1_g000006.1FAR1 family protein
Rmu_sc0022201.1_g000001.1FAR1 family protein
Rmu_sc0022408.1_g000011.1FAR1 family protein
Rmu_sc0022527.1_g000001.1FAR1 family protein
Rmu_sc0024939.1_g000001.1FAR1 family protein
Rmu_sc0025101.1_g000001.1FAR1 family protein
Rmu_sc0025564.1_g000001.1FAR1 family protein
Rmu_sc0026606.1_g000001.1FAR1 family protein
Rmu_sc0030614.1_g000001.1FAR1 family protein
Rmu_sc0035188.1_g000002.1FAR1 family protein
Rmu_sc0039772.1_g000001.1FAR1 family protein
Rmu_ssc0000024.1_g000021.1FAR1 family protein
Rmu_ssc0000158.1_g000017.1FAR1 family protein
Rmu_ssc0000161.1_g000025.1FAR1 family protein
Rmu_ssc0000186.1_g000028.1FAR1 family protein
Rmu_ssc0000211.1_g000015.1FAR1 family protein
Rmu_ssc0000240.1_g000012.1FAR1 family protein
Rmu_ssc0000291.1_g000011.1FAR1 family protein
Rmu_ssc0000400.1_g000101.1FAR1 family protein
Rmu_ssc0000400.1_g000103.1FAR1 family protein
Rmu_ssc0000433.1_g000004.1FAR1 family protein
FAR1 Family Introduction

We show that Arabidopsis FHY3 and FAR1, which encode two proteins related to Mutator-like transposases, act together to modulate phyA signaling by directly activating the transcription of FHY1 and FHL, whose products are essential for light-induced phyA nuclear accumulation and subsequent light responses. FHY3 and FAR1 have separable DNA binding and transcriptional activation domains that are highly conserved in Mutator-like transposases. Further, expression of FHY3 and FAR1 is negatively regulated by phyA signaling. We propose that FHY3 and FAR1 represent transcription factors that have been co-opted from an ancient Mutator-like transposase(s) to modulate phyA-signaling homeostasis in higher plants.

We next used a yeast one-hybrid assay to delineate the DNA sequences to which FHY3 and FAR1 bind. GAD-FHY3 or GAD-FAR1 fusion proteins (GAD, GAL4 transcriptional activation domain), but not GAD alone, activated the LacZ reporter genes driven by the FHY1 and FHL promoters. Deletion analysis narrowed down the FHY3/FAR1 binding site to a 39-bp promoter subfragment located on the "a" fragment for both FHY1 and FHL. Notably, these subfragments share a stretch of consensus sequence, 5'-TTCACGCGCC-3'. Mutating the core sequence "CACGCGC" of this motif (m2 and m3 for FHY1, m5 for FHL) abolished the reporter gene activation by both GAD-FHY3 and GAD-FAR1. Mutating the flanking sequences (m1 and m4) did not obviously affect the reporter gene activation by GAD-FAR1, but clearly reduced activation by GAD-FHY3. Thus, "CACGCGC" likely defines a cis-element that confers specific binding for FHY3 and FAR1 and is named FBS for FHY3-FAR1 binding site.

Lin R, Ding L, Casola C, Ripoll DR, Feschotte C, Wang H.
Transposase-derived transcription factors regulate light signaling in Arabidopsis.
Science, 2007. 318(5854): p. 1302-5.
PMID: 18033885