PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Prunus avium
FAR1 Family
Species TF ID Description
Pav_sc0000009.1_g1340.1.brFAR1 family protein
Pav_sc0000017.1_g1340.1.brFAR1 family protein
Pav_sc0000048.1_g250.1.brFAR1 family protein
Pav_sc0000062.1_g290.1.brFAR1 family protein
Pav_sc0000099.1_g180.1.brFAR1 family protein
Pav_sc0000113.1_g650.1.mkFAR1 family protein
Pav_sc0000157.1_g650.1.mkFAR1 family protein
Pav_sc0000175.1_g230.1.brFAR1 family protein
Pav_sc0000175.1_g570.1.brFAR1 family protein
Pav_sc0000184.1_g110.1.mkFAR1 family protein
Pav_sc0000200.1_g440.1.brFAR1 family protein
Pav_sc0000228.1_g070.1.brFAR1 family protein
Pav_sc0000376.1_g250.1.brFAR1 family protein
Pav_sc0000399.1_g140.1.brFAR1 family protein
Pav_sc0000502.1_g210.1.brFAR1 family protein
Pav_sc0000502.1_g720.1.brFAR1 family protein
Pav_sc0000535.1_g100.1.brFAR1 family protein
Pav_sc0000575.1_g220.1.brFAR1 family protein
Pav_sc0000578.1_g150.1.brFAR1 family protein
Pav_sc0000588.1_g490.1.brFAR1 family protein
Pav_sc0000591.1_g350.1.brFAR1 family protein
Pav_sc0000600.1_g670.1.mkFAR1 family protein
Pav_sc0000615.1_g260.1.brFAR1 family protein
Pav_sc0000636.1_g410.1.mkFAR1 family protein
Pav_sc0000648.1_g310.1.mkFAR1 family protein
Pav_sc0000648.1_g320.1.mkFAR1 family protein
Pav_sc0000648.1_g330.1.mkFAR1 family protein
Pav_sc0000648.1_g340.1.mkFAR1 family protein
Pav_sc0000677.1_g320.1.brFAR1 family protein
Pav_sc0000732.1_g150.1.brFAR1 family protein
Pav_sc0000747.1_g440.1.brFAR1 family protein
Pav_sc0000830.1_g260.1.brFAR1 family protein
Pav_sc0000882.1_g040.1.brFAR1 family protein
Pav_sc0000893.1_g1070.1.brFAR1 family protein
Pav_sc0000907.1_g180.1.brFAR1 family protein
Pav_sc0001014.1_g100.1.mkFAR1 family protein
Pav_sc0001015.1_g290.1.mkFAR1 family protein
Pav_sc0001031.1_g120.1.brFAR1 family protein
Pav_sc0001076.1_g150.1.brFAR1 family protein
Pav_sc0001091.1_g040.1.mkFAR1 family protein
Pav_sc0001109.1_g070.1.brFAR1 family protein
Pav_sc0001171.1_g140.1.brFAR1 family protein
Pav_sc0001179.1_g010.1.brFAR1 family protein
Pav_sc0001181.1_g450.1.brFAR1 family protein
Pav_sc0001196.1_g1560.1.mkFAR1 family protein
Pav_sc0001203.1_g080.1.brFAR1 family protein
Pav_sc0001267.1_g030.1.brFAR1 family protein
Pav_sc0001296.1_g010.1.brFAR1 family protein
Pav_sc0001311.1_g030.1.brFAR1 family protein
Pav_sc0001323.1_g1140.1.brFAR1 family protein
Pav_sc0001342.1_g100.1.mkFAR1 family protein
Pav_sc0001369.1_g340.1.mkFAR1 family protein
Pav_sc0001369.1_g440.1.mkFAR1 family protein
Pav_sc0001405.1_g690.1.mkFAR1 family protein
Pav_sc0001461.1_g500.1.mkFAR1 family protein
Pav_sc0001528.1_g010.1.brFAR1 family protein
Pav_sc0001540.1_g510.1.brFAR1 family protein
Pav_sc0001543.1_g060.1.mkFAR1 family protein
Pav_sc0001763.1_g260.1.brFAR1 family protein
Pav_sc0001774.1_g030.1.mkFAR1 family protein
Pav_sc0001786.1_g200.1.brFAR1 family protein
Pav_sc0001792.1_g030.1.brFAR1 family protein
Pav_sc0001820.1_g080.1.brFAR1 family protein
Pav_sc0001883.1_g130.1.brFAR1 family protein
Pav_sc0001971.1_g010.1.brFAR1 family protein
Pav_sc0001992.1_g050.1.brFAR1 family protein
Pav_sc0002233.1_g410.1.mkFAR1 family protein
Pav_sc0002250.1_g270.1.brFAR1 family protein
Pav_sc0002264.1_g160.1.brFAR1 family protein
Pav_sc0002319.1_g150.1.brFAR1 family protein
Pav_sc0002613.1_g130.1.mkFAR1 family protein
Pav_sc0002613.1_g290.1.mkFAR1 family protein
Pav_sc0002659.1_g180.1.brFAR1 family protein
Pav_sc0002792.1_g310.1.brFAR1 family protein
Pav_sc0002828.1_g330.1.brFAR1 family protein
Pav_sc0002935.1_g060.1.brFAR1 family protein
Pav_sc0003015.1_g090.1.mkFAR1 family protein
Pav_sc0003169.1_g210.1.brFAR1 family protein
Pav_sc0003363.1_g040.1.brFAR1 family protein
Pav_sc0003465.1_g270.1.brFAR1 family protein
Pav_sc0003586.1_g020.1.brFAR1 family protein
Pav_sc0003613.1_g010.1.brFAR1 family protein
Pav_sc0003734.1_g100.1.brFAR1 family protein
Pav_sc0003828.1_g010.1.brFAR1 family protein
Pav_sc0003853.1_g010.1.brFAR1 family protein
Pav_sc0003853.1_g100.1.brFAR1 family protein
Pav_sc0004447.1_g050.1.brFAR1 family protein
Pav_sc0004917.1_g020.1.brFAR1 family protein
Pav_sc0006064.1_g050.1.mkFAR1 family protein
Pav_sc0008925.1_g010.1.brFAR1 family protein
Pav_sc0009436.1_g010.1.brFAR1 family protein
FAR1 Family Introduction

We show that Arabidopsis FHY3 and FAR1, which encode two proteins related to Mutator-like transposases, act together to modulate phyA signaling by directly activating the transcription of FHY1 and FHL, whose products are essential for light-induced phyA nuclear accumulation and subsequent light responses. FHY3 and FAR1 have separable DNA binding and transcriptional activation domains that are highly conserved in Mutator-like transposases. Further, expression of FHY3 and FAR1 is negatively regulated by phyA signaling. We propose that FHY3 and FAR1 represent transcription factors that have been co-opted from an ancient Mutator-like transposase(s) to modulate phyA-signaling homeostasis in higher plants.

We next used a yeast one-hybrid assay to delineate the DNA sequences to which FHY3 and FAR1 bind. GAD-FHY3 or GAD-FAR1 fusion proteins (GAD, GAL4 transcriptional activation domain), but not GAD alone, activated the LacZ reporter genes driven by the FHY1 and FHL promoters. Deletion analysis narrowed down the FHY3/FAR1 binding site to a 39-bp promoter subfragment located on the "a" fragment for both FHY1 and FHL. Notably, these subfragments share a stretch of consensus sequence, 5'-TTCACGCGCC-3'. Mutating the core sequence "CACGCGC" of this motif (m2 and m3 for FHY1, m5 for FHL) abolished the reporter gene activation by both GAD-FHY3 and GAD-FAR1. Mutating the flanking sequences (m1 and m4) did not obviously affect the reporter gene activation by GAD-FAR1, but clearly reduced activation by GAD-FHY3. Thus, "CACGCGC" likely defines a cis-element that confers specific binding for FHY3 and FAR1 and is named FBS for FHY3-FAR1 binding site.

Lin R, Ding L, Casola C, Ripoll DR, Feschotte C, Wang H.
Transposase-derived transcription factors regulate light signaling in Arabidopsis.
Science, 2007. 318(5854): p. 1302-5.
PMID: 18033885