PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Dendrobium catenatum
Species TF ID Description
XP_020673448.1MIKC_MADS family protein
XP_020673470.1MIKC_MADS family protein
XP_020675689.1MIKC_MADS family protein
XP_020675690.1MIKC_MADS family protein
XP_020676503.1MIKC_MADS family protein
XP_020677730.1MIKC_MADS family protein
XP_020678473.1MIKC_MADS family protein
XP_020678484.1MIKC_MADS family protein
XP_020678485.1MIKC_MADS family protein
XP_020679397.1MIKC_MADS family protein
XP_020679600.1MIKC_MADS family protein
XP_020679601.1MIKC_MADS family protein
XP_020680523.1MIKC_MADS family protein
XP_020683513.1MIKC_MADS family protein
XP_020687155.1MIKC_MADS family protein
XP_020687524.1MIKC_MADS family protein
XP_020687532.1MIKC_MADS family protein
XP_020687696.1MIKC_MADS family protein
XP_020691867.1MIKC_MADS family protein
XP_020692239.1MIKC_MADS family protein
XP_020692569.1MIKC_MADS family protein
XP_020692570.1MIKC_MADS family protein
XP_020692571.1MIKC_MADS family protein
XP_020692709.1MIKC_MADS family protein
XP_020692710.1MIKC_MADS family protein
XP_020692711.1MIKC_MADS family protein
XP_020694525.1MIKC_MADS family protein
XP_020694526.1MIKC_MADS family protein
XP_020699194.1MIKC_MADS family protein
XP_020700214.1MIKC_MADS family protein
XP_020700529.1MIKC_MADS family protein
XP_020703300.1MIKC_MADS family protein
XP_020706096.1MIKC_MADS family protein
XP_028548041.1MIKC_MADS family protein
XP_028548860.1MIKC_MADS family protein
XP_028549016.1MIKC_MADS family protein
XP_028550923.1MIKC_MADS family protein
XP_028551406.1MIKC_MADS family protein
XP_028551762.1MIKC_MADS family protein
XP_028551763.1MIKC_MADS family protein
XP_028551969.1MIKC_MADS family protein
XP_028552416.1MIKC_MADS family protein
XP_028553814.1MIKC_MADS family protein
XP_028556133.1MIKC_MADS family protein
XP_028556190.1MIKC_MADS family protein
MIKC_MADS (MIKC-type MADS) Family Introduction

The best studied plant MADS-box transcription factors are those involved in floral organ identity determination. Analysis of homeotic floral mutants resulted in the formulation of a genetic model, named the ABC model, that explains how the combined functions of three classes of genes (A, B, and C) determine the identity of the four flower organs (reviewed by Coen and Meyerowitz, 1991). Arabidopsis has two A-class genes (AP1 and AP2 [Bowman et al., 1989]), two B-class genes (PI and AP3), and a single C-class gene (AG), of which only AP2 is not a MADS-box gene. Recently, it was shown that the Arabidopsis B- and C-function genes, which control petal, stamen, and carpel development, are functionally dependent on three highly similar MADS-box genes, SEP1, SEP2, and SEP3 (Pelaz et al., 2000). Interestingly, only when mutant knockout alleles of the three SEP genes were combined in a triple sep1 sep2 sep3 mutant was loss of petal, stamen, and carpel identity observed, resulting in a flower composed of only sepals. This example shows that redundancy occurs in the MADS-box gene family, which complicates reverse genetic strategies for gene function analysis. The SHP genes provide another example of MADS-box gene redundancy. shp1 and shp2 single mutants do not exhibit any phenotypic effect, whereas in the double mutant, development of the dehiscence zone is disturbed in the fruit, resulting in a failure to release seeds (Liljegren et al., 2000)[1].

It has been proposed that there are at least 2 lineages (type I and type II) of MADS-box genes in plants, animals, and fungi. Most of the well-studied plant genes are type II genes and have three more domains than type I genes from the N to the C terminus of the protein:intervening (I) domain (~30 codons), keratin-lik e coiled-coil (K) domain (~70 codons), and Cterminal (C) domain (variable length). These genes are called the MIKC-type and are specific to plants[2].

The MADS-box is a DNA binding domain of 58 amino acids that binds DNA at consensus recognition sequences known as CArG boxes [CC(A/T)6GG] (Hayes et al., 1988; Riechmann et al., 1996b). The interaction with DNA has been studied in detail for the human and yeast MADS-box proteins thanks to the resolved crystal structures (Pellegrini et al., 1995; Santelli and Richmond, 2000). The I domain is less conserved and contributes to the specification of dimerization. The K domain is characterized by a coiled-coil structure, which facilitates the dimerization of MADS-box proteins (Davies et al., 1996; Fan et al., 1997). The C domain is the least conserved domain; in some cases, it has been shown to contain a transactivation domain or to contribute to the formation of multimeric MADS-box protein complexes (Egea-Cortines et al., 1999; Honma and Goto, 2001)[1].

1.Parenicova L, de Folter S, Kieffer M, Horner DS, Favalli C, Busscher J, Cook HE, Ingram RM, Kater MM, Davies B, Angenent GC, Colombo L.
Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world.
Plant Cell. 2003 Jul;15(7):1538-51.
PMID: 12837945
2.Nam J, dePamphilis CW, Ma H, Nei M.
Antiquity and evolution of the MADS-box gene family controlling flower development in plants.
Mol Biol Evol. 2003 Sep;20(9):1435-47. Epub 2003 May 30.
PMID: 12777513