PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Species | TF ID | Description |
---|---|---|
Sorghum bicolor (40) | Sobic.001G023900.1.p | GATA family protein |
Sobic.001G023900.2.p | GATA family protein | |
Sobic.001G062700.1.p | GATA family protein | |
Sobic.001G100100.1.p | GATA family protein | |
Sobic.001G135400.1.p | GATA family protein | |
Sobic.001G137300.1.p | GATA family protein | |
Sobic.001G229200.1.p | GATA family protein | |
Sobic.001G299600.1.p | GATA family protein | |
Sobic.001G506066.1.p | GATA family protein | |
Sobic.001G506066.2.p | GATA family protein | |
Sobic.002G018250.1.p | GATA family protein | |
Sobic.003G157300.3.p | GATA family protein | |
Sobic.003G246800.1.p | GATA family protein | |
Sobic.003G293100.1.p | GATA family protein | |
Sobic.003G445800.1.p | GATA family protein | |
Sobic.004G023500.1.p | GATA family protein | |
Sobic.004G094100.1.p | GATA family protein | |
Sobic.004G301100.1.p | GATA family protein | |
Sobic.004G301100.2.p | GATA family protein | |
Sobic.004G337500.1.p | GATA family protein | |
Sobic.004G337500.2.p | GATA family protein | |
Sobic.005G022400.2.p | GATA family protein | |
Sobic.005G162400.2.p | GATA family protein | |
Sobic.006G162800.1.p | GATA family protein | |
Sobic.006G162800.2.p | GATA family protein | |
Sobic.006G166100.1.p | GATA family protein | |
Sobic.008G051400.2.p | GATA family protein | |
Sobic.008G051400.3.p | GATA family protein | |
Sobic.008G051400.4.p | GATA family protein | |
Sobic.008G051400.5.p | GATA family protein | |
Sobic.008G051500.1.p | GATA family protein | |
Sobic.008G051700.1.p | GATA family protein | |
Sobic.008G179800.1.p | GATA family protein | |
Sobic.009G050600.1.p | GATA family protein | |
Sobic.009G050600.2.p | GATA family protein | |
Sobic.009G202000.1.p | GATA family protein | |
Sobic.009G236000.1.p | GATA family protein | |
Sobic.009G243600.1.p | GATA family protein | |
Sobic.010G173400.1.p | GATA family protein | |
Sobic.010G249200.1.p | GATA family protein |
GATA factors were first identified as proteins that interact with conserved WGATAR (W = T or A; R = G or A) motifs involved in erythroid-specific gene expressionin vertebrates.
GATA factors are characterised by the presence of conserved, type-IV zinc-finger motifs Animal factors typically contain two C-x2-Cx17-C-x2-C zinc-finger domains. The majority of known fungal GATA factors contain a single C-x2-C-x17-C-x2-C finger with greatest similarity to the carboxyl (C) terminal finger of animal GATA factors.Several examples of fungal GATA factors containing a variant C-x2-C-x18-C-x2-C DNA-binding domain are also known.
Examples of both C-x2-C-x17-Cx2-C (Type IVa) and C-x2-C-x18-C-x2-C (Type IVb) GATA factors are found within fungi; animals onlycontain the former configuration, and plants only the latter. Plant GATA factors typically contain a single zinc finger. The Arabidopsis type-IV zinc-finger proteins may represent the previously defined family of nuclear GATA-binding proteins implicated in light-responsive transcription.
Teakle GR, Manfield IW, Graham JF, Gilmartin PM.
Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics.
Plant Mol Biol. 2002 Sep;50(1):43-57.
PMID: 12139008