PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Species | TF ID | Description |
---|---|---|
Panicum hallii (44) | Pahal.A00142.1 | GATA family protein |
Pahal.A00861.1 | GATA family protein | |
Pahal.A01097.1 | GATA family protein | |
Pahal.A01097.2 | GATA family protein | |
Pahal.A01874.1 | GATA family protein | |
Pahal.A02746.1 | GATA family protein | |
Pahal.A03765.1 | GATA family protein | |
Pahal.A03765.2 | GATA family protein | |
Pahal.B01216.1 | GATA family protein | |
Pahal.C00551.1 | GATA family protein | |
Pahal.C00551.2 | GATA family protein | |
Pahal.C00551.3 | GATA family protein | |
Pahal.C00552.1 | GATA family protein | |
Pahal.C00553.1 | GATA family protein | |
Pahal.C01412.1 | GATA family protein | |
Pahal.C01825.1 | GATA family protein | |
Pahal.C01915.1 | GATA family protein | |
Pahal.C02274.1 | GATA family protein | |
Pahal.C04822.1 | GATA family protein | |
Pahal.D00009.1 | GATA family protein | |
Pahal.D00009.2 | GATA family protein | |
Pahal.D01034.1 | GATA family protein | |
Pahal.E00368.1 | GATA family protein | |
Pahal.E01672.1 | GATA family protein | |
Pahal.E02237.1 | GATA family protein | |
Pahal.G00724.1 | GATA family protein | |
Pahal.G00724.2 | GATA family protein | |
Pahal.G01759.1 | GATA family protein | |
Pahal.G01759.2 | GATA family protein | |
Pahal.G01759.3 | GATA family protein | |
Pahal.G01790.1 | GATA family protein | |
Pahal.G01790.2 | GATA family protein | |
Pahal.G01790.3 | GATA family protein | |
Pahal.G01790.4 | GATA family protein | |
Pahal.H00979.1 | GATA family protein | |
Pahal.H01416.1 | GATA family protein | |
Pahal.I00392.1 | GATA family protein | |
Pahal.I01844.1 | GATA family protein | |
Pahal.I02227.1 | GATA family protein | |
Pahal.I02227.2 | GATA family protein | |
Pahal.I02227.3 | GATA family protein | |
Pahal.I03152.1 | GATA family protein | |
Pahal.I04059.1 | GATA family protein | |
Pahal.J01665.1 | GATA family protein |
GATA factors were first identified as proteins that interact with conserved WGATAR (W = T or A; R = G or A) motifs involved in erythroid-specific gene expressionin vertebrates.
GATA factors are characterised by the presence of conserved, type-IV zinc-finger motifs Animal factors typically contain two C-x2-Cx17-C-x2-C zinc-finger domains. The majority of known fungal GATA factors contain a single C-x2-C-x17-C-x2-C finger with greatest similarity to the carboxyl (C) terminal finger of animal GATA factors.Several examples of fungal GATA factors containing a variant C-x2-C-x18-C-x2-C DNA-binding domain are also known.
Examples of both C-x2-C-x17-Cx2-C (Type IVa) and C-x2-C-x18-C-x2-C (Type IVb) GATA factors are found within fungi; animals onlycontain the former configuration, and plants only the latter. Plant GATA factors typically contain a single zinc finger. The Arabidopsis type-IV zinc-finger proteins may represent the previously defined family of nuclear GATA-binding proteins implicated in light-responsive transcription.
Teakle GR, Manfield IW, Graham JF, Gilmartin PM.
Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics.
Plant Mol Biol. 2002 Sep;50(1):43-57.
PMID: 12139008