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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Species | TF ID | Description |
---|---|---|
Oryza rufipogon (32) | ORUFI01G16060.1 | GATA family protein |
ORUFI01G16060.2 | GATA family protein | |
ORUFI01G28370.1 | GATA family protein | |
ORUFI01G33750.1 | GATA family protein | |
ORUFI01G49320.1 | GATA family protein | |
ORUFI02G03830.1 | GATA family protein | |
ORUFI02G09020.1 | GATA family protein | |
ORUFI02G27260.1 | GATA family protein | |
ORUFI02G38070.1 | GATA family protein | |
ORUFI02G38070.2 | GATA family protein | |
ORUFI03G02190.1 | GATA family protein | |
ORUFI03G03250.1 | GATA family protein | |
ORUFI03G05800.1 | GATA family protein | |
ORUFI03G31080.1 | GATA family protein | |
ORUFI03G34610.1 | GATA family protein | |
ORUFI03G41540.1 | GATA family protein | |
ORUFI04G21800.1 | GATA family protein | |
ORUFI04G21800.2 | GATA family protein | |
ORUFI04G22090.1 | GATA family protein | |
ORUFI05G04010.1 | GATA family protein | |
ORUFI05G24500.1 | GATA family protein | |
ORUFI05G28050.1 | GATA family protein | |
ORUFI05G28920.1 | GATA family protein | |
ORUFI06G20160.1 | GATA family protein | |
ORUFI06G20160.2 | GATA family protein | |
ORUFI06G28170.1 | GATA family protein | |
ORUFI07G23200.1 | GATA family protein | |
ORUFI10G12920.1 | GATA family protein | |
ORUFI10G19430.1 | GATA family protein | |
ORUFI11G05240.1 | GATA family protein | |
ORUFI12G04780.1 | GATA family protein | |
ORUFI12G21640.1 | GATA family protein |
GATA factors were first identified as proteins that interact with conserved WGATAR (W = T or A; R = G or A) motifs involved in erythroid-specific gene expressionin vertebrates.
GATA factors are characterised by the presence of conserved, type-IV zinc-finger motifs Animal factors typically contain two C-x2-Cx17-C-x2-C zinc-finger domains. The majority of known fungal GATA factors contain a single C-x2-C-x17-C-x2-C finger with greatest similarity to the carboxyl (C) terminal finger of animal GATA factors.Several examples of fungal GATA factors containing a variant C-x2-C-x18-C-x2-C DNA-binding domain are also known.
Examples of both C-x2-C-x17-Cx2-C (Type IVa) and C-x2-C-x18-C-x2-C (Type IVb) GATA factors are found within fungi; animals onlycontain the former configuration, and plants only the latter. Plant GATA factors typically contain a single zinc finger. The Arabidopsis type-IV zinc-finger proteins may represent the previously defined family of nuclear GATA-binding proteins implicated in light-responsive transcription.
Teakle GR, Manfield IW, Graham JF, Gilmartin PM.
Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics.
Plant Mol Biol. 2002 Sep;50(1):43-57.
PMID: 12139008