PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Species | TF ID | Description |
---|---|---|
Malus domestica (35) | MDP0000129092 | GATA family protein |
MDP0000131803 | GATA family protein | |
MDP0000137305 | GATA family protein | |
MDP0000166889 | GATA family protein | |
MDP0000172464 | GATA family protein | |
MDP0000182176 | GATA family protein | |
MDP0000190038 | GATA family protein | |
MDP0000192617 | GATA family protein | |
MDP0000220844 | GATA family protein | |
MDP0000224540 | GATA family protein | |
MDP0000237740 | GATA family protein | |
MDP0000243535 | GATA family protein | |
MDP0000248210 | GATA family protein | |
MDP0000248942 | GATA family protein | |
MDP0000253174 | GATA family protein | |
MDP0000255235 | GATA family protein | |
MDP0000263391 | GATA family protein | |
MDP0000275252 | GATA family protein | |
MDP0000290156 | GATA family protein | |
MDP0000303048 | GATA family protein | |
MDP0000309356 | GATA family protein | |
MDP0000309902 | GATA family protein | |
MDP0000310271 | GATA family protein | |
MDP0000316985 | GATA family protein | |
MDP0000338280 | GATA family protein | |
MDP0000401351 | GATA family protein | |
MDP0000462997 | GATA family protein | |
MDP0000528111 | GATA family protein | |
MDP0000542350 | GATA family protein | |
MDP0000542351 | GATA family protein | |
MDP0000566760 | GATA family protein | |
MDP0000703990 | GATA family protein | |
MDP0000739900 | GATA family protein | |
MDP0000777336 | GATA family protein | |
MDP0000824445 | GATA family protein |
GATA factors were first identified as proteins that interact with conserved WGATAR (W = T or A; R = G or A) motifs involved in erythroid-specific gene expressionin vertebrates.
GATA factors are characterised by the presence of conserved, type-IV zinc-finger motifs Animal factors typically contain two C-x2-Cx17-C-x2-C zinc-finger domains. The majority of known fungal GATA factors contain a single C-x2-C-x17-C-x2-C finger with greatest similarity to the carboxyl (C) terminal finger of animal GATA factors.Several examples of fungal GATA factors containing a variant C-x2-C-x18-C-x2-C DNA-binding domain are also known.
Examples of both C-x2-C-x17-Cx2-C (Type IVa) and C-x2-C-x18-C-x2-C (Type IVb) GATA factors are found within fungi; animals onlycontain the former configuration, and plants only the latter. Plant GATA factors typically contain a single zinc finger. The Arabidopsis type-IV zinc-finger proteins may represent the previously defined family of nuclear GATA-binding proteins implicated in light-responsive transcription.
Teakle GR, Manfield IW, Graham JF, Gilmartin PM.
Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics.
Plant Mol Biol. 2002 Sep;50(1):43-57.
PMID: 12139008