PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Species | TF ID | Description |
---|---|---|
Lactuca sativa (22) | Lsa000226 | GATA family protein |
Lsa001100 | GATA family protein | |
Lsa002169 | GATA family protein | |
Lsa002196 | GATA family protein | |
Lsa002621 | GATA family protein | |
Lsa003298 | GATA family protein | |
Lsa003402 | GATA family protein | |
Lsa005467 | GATA family protein | |
Lsa005967 | GATA family protein | |
Lsa006789 | GATA family protein | |
Lsa007149 | GATA family protein | |
Lsa008187 | GATA family protein | |
Lsa008366 | GATA family protein | |
Lsa011845 | GATA family protein | |
Lsa011874 | GATA family protein | |
Lsa014018 | GATA family protein | |
Lsa015262 | GATA family protein | |
Lsa016250 | GATA family protein | |
Lsa016716 | GATA family protein | |
Lsa017701 | GATA family protein | |
Lsa017793 | GATA family protein | |
Lsa019275 | GATA family protein |
GATA factors were first identified as proteins that interact with conserved WGATAR (W = T or A; R = G or A) motifs involved in erythroid-specific gene expressionin vertebrates.
GATA factors are characterised by the presence of conserved, type-IV zinc-finger motifs Animal factors typically contain two C-x2-Cx17-C-x2-C zinc-finger domains. The majority of known fungal GATA factors contain a single C-x2-C-x17-C-x2-C finger with greatest similarity to the carboxyl (C) terminal finger of animal GATA factors.Several examples of fungal GATA factors containing a variant C-x2-C-x18-C-x2-C DNA-binding domain are also known.
Examples of both C-x2-C-x17-Cx2-C (Type IVa) and C-x2-C-x18-C-x2-C (Type IVb) GATA factors are found within fungi; animals onlycontain the former configuration, and plants only the latter. Plant GATA factors typically contain a single zinc finger. The Arabidopsis type-IV zinc-finger proteins may represent the previously defined family of nuclear GATA-binding proteins implicated in light-responsive transcription.
Teakle GR, Manfield IW, Graham JF, Gilmartin PM.
Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics.
Plant Mol Biol. 2002 Sep;50(1):43-57.
PMID: 12139008