PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Species | TF ID | Description |
---|---|---|
Daucus carota (29) | DCAR_000653 | GATA family protein |
DCAR_000755 | GATA family protein | |
DCAR_001816 | GATA family protein | |
DCAR_002499 | GATA family protein | |
DCAR_004426 | GATA family protein | |
DCAR_004466 | GATA family protein | |
DCAR_004591 | GATA family protein | |
DCAR_005777 | GATA family protein | |
DCAR_006433 | GATA family protein | |
DCAR_008333 | GATA family protein | |
DCAR_009674 | GATA family protein | |
DCAR_011976 | GATA family protein | |
DCAR_012851 | GATA family protein | |
DCAR_015528 | GATA family protein | |
DCAR_016194 | GATA family protein | |
DCAR_016866 | GATA family protein | |
DCAR_017331 | GATA family protein | |
DCAR_018802 | GATA family protein | |
DCAR_019883 | GATA family protein | |
DCAR_021905 | GATA family protein | |
DCAR_022745 | GATA family protein | |
DCAR_022910 | GATA family protein | |
DCAR_025944 | GATA family protein | |
DCAR_025986 | GATA family protein | |
DCAR_027021 | GATA family protein | |
DCAR_027367 | GATA family protein | |
DCAR_030484 | GATA family protein | |
DCAR_030778 | GATA family protein | |
DCAR_032241 | GATA family protein |
GATA factors were first identified as proteins that interact with conserved WGATAR (W = T or A; R = G or A) motifs involved in erythroid-specific gene expressionin vertebrates.
GATA factors are characterised by the presence of conserved, type-IV zinc-finger motifs Animal factors typically contain two C-x2-Cx17-C-x2-C zinc-finger domains. The majority of known fungal GATA factors contain a single C-x2-C-x17-C-x2-C finger with greatest similarity to the carboxyl (C) terminal finger of animal GATA factors.Several examples of fungal GATA factors containing a variant C-x2-C-x18-C-x2-C DNA-binding domain are also known.
Examples of both C-x2-C-x17-Cx2-C (Type IVa) and C-x2-C-x18-C-x2-C (Type IVb) GATA factors are found within fungi; animals onlycontain the former configuration, and plants only the latter. Plant GATA factors typically contain a single zinc finger. The Arabidopsis type-IV zinc-finger proteins may represent the previously defined family of nuclear GATA-binding proteins implicated in light-responsive transcription.
Teakle GR, Manfield IW, Graham JF, Gilmartin PM.
Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics.
Plant Mol Biol. 2002 Sep;50(1):43-57.
PMID: 12139008