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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Species | TF ID | Description |
---|---|---|
Cucumis sativus (36) | Cucsa.038810.1 | GATA family protein |
Cucsa.043350.1 | GATA family protein | |
Cucsa.069460.1 | GATA family protein | |
Cucsa.106490.1 | GATA family protein | |
Cucsa.109180.1 | GATA family protein | |
Cucsa.109180.2 | GATA family protein | |
Cucsa.109180.3 | GATA family protein | |
Cucsa.127470.1 | GATA family protein | |
Cucsa.137630.1 | GATA family protein | |
Cucsa.153540.1 | GATA family protein | |
Cucsa.160520.1 | GATA family protein | |
Cucsa.160520.2 | GATA family protein | |
Cucsa.160520.3 | GATA family protein | |
Cucsa.160520.4 | GATA family protein | |
Cucsa.160520.5 | GATA family protein | |
Cucsa.160520.6 | GATA family protein | |
Cucsa.160520.7 | GATA family protein | |
Cucsa.160530.1 | GATA family protein | |
Cucsa.161160.1 | GATA family protein | |
Cucsa.194390.1 | GATA family protein | |
Cucsa.201200.1 | GATA family protein | |
Cucsa.205230.1 | GATA family protein | |
Cucsa.218190.1 | GATA family protein | |
Cucsa.252730.1 | GATA family protein | |
Cucsa.308400.1 | GATA family protein | |
Cucsa.312530.1 | GATA family protein | |
Cucsa.313750.1 | GATA family protein | |
Cucsa.321290.1 | GATA family protein | |
Cucsa.321290.2 | GATA family protein | |
Cucsa.340570.1 | GATA family protein | |
Cucsa.353330.1 | GATA family protein | |
Cucsa.359570.1 | GATA family protein | |
Cucsa.359570.5 | GATA family protein | |
Cucsa.359570.6 | GATA family protein | |
Cucsa.361150.1 | GATA family protein | |
Cucsa.397360.1 | GATA family protein |
GATA factors were first identified as proteins that interact with conserved WGATAR (W = T or A; R = G or A) motifs involved in erythroid-specific gene expressionin vertebrates.
GATA factors are characterised by the presence of conserved, type-IV zinc-finger motifs Animal factors typically contain two C-x2-Cx17-C-x2-C zinc-finger domains. The majority of known fungal GATA factors contain a single C-x2-C-x17-C-x2-C finger with greatest similarity to the carboxyl (C) terminal finger of animal GATA factors.Several examples of fungal GATA factors containing a variant C-x2-C-x18-C-x2-C DNA-binding domain are also known.
Examples of both C-x2-C-x17-Cx2-C (Type IVa) and C-x2-C-x18-C-x2-C (Type IVb) GATA factors are found within fungi; animals onlycontain the former configuration, and plants only the latter. Plant GATA factors typically contain a single zinc finger. The Arabidopsis type-IV zinc-finger proteins may represent the previously defined family of nuclear GATA-binding proteins implicated in light-responsive transcription.
Teakle GR, Manfield IW, Graham JF, Gilmartin PM.
Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics.
Plant Mol Biol. 2002 Sep;50(1):43-57.
PMID: 12139008