PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Species | TF ID | Description |
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Coffea canephora (22) | Cc01_g11010 | GATA family protein |
Cc02_g11290 | GATA family protein | |
Cc02_g17010 | GATA family protein | |
Cc02_g20800 | GATA family protein | |
Cc02_g20830 | GATA family protein | |
Cc02_g30320 | GATA family protein | |
Cc02_g32450 | GATA family protein | |
Cc02_g34640 | GATA family protein | |
Cc03_g01210 | GATA family protein | |
Cc03_g07150 | GATA family protein | |
Cc03_g16300 | GATA family protein | |
Cc04_g00300 | GATA family protein | |
Cc04_g02680 | GATA family protein | |
Cc05_g02130 | GATA family protein | |
Cc06_g11380 | GATA family protein | |
Cc07_g09570 | GATA family protein | |
Cc07_g10350 | GATA family protein | |
Cc08_g09710 | GATA family protein | |
Cc08_g11450 | GATA family protein | |
Cc08_g11860 | GATA family protein | |
Cc10_g08490 | GATA family protein | |
Cc10_g08500 | GATA family protein |
GATA factors were first identified as proteins that interact with conserved WGATAR (W = T or A; R = G or A) motifs involved in erythroid-specific gene expressionin vertebrates.
GATA factors are characterised by the presence of conserved, type-IV zinc-finger motifs Animal factors typically contain two C-x2-Cx17-C-x2-C zinc-finger domains. The majority of known fungal GATA factors contain a single C-x2-C-x17-C-x2-C finger with greatest similarity to the carboxyl (C) terminal finger of animal GATA factors.Several examples of fungal GATA factors containing a variant C-x2-C-x18-C-x2-C DNA-binding domain are also known.
Examples of both C-x2-C-x17-Cx2-C (Type IVa) and C-x2-C-x18-C-x2-C (Type IVb) GATA factors are found within fungi; animals onlycontain the former configuration, and plants only the latter. Plant GATA factors typically contain a single zinc finger. The Arabidopsis type-IV zinc-finger proteins may represent the previously defined family of nuclear GATA-binding proteins implicated in light-responsive transcription.
Teakle GR, Manfield IW, Graham JF, Gilmartin PM.
Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics.
Plant Mol Biol. 2002 Sep;50(1):43-57.
PMID: 12139008