PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Species | TF ID | Description |
---|---|---|
Capsicum annuum (28) | CA00g32430 | GATA family protein |
CA00g34300 | GATA family protein | |
CA00g60620 | GATA family protein | |
CA00g87020 | GATA family protein | |
CA01g06170 | GATA family protein | |
CA01g14220 | GATA family protein | |
CA01g19720 | GATA family protein | |
CA01g31670 | GATA family protein | |
CA01g33720 | GATA family protein | |
CA02g05270 | GATA family protein | |
CA02g21840 | GATA family protein | |
CA02g22480 | GATA family protein | |
CA02g22540 | GATA family protein | |
CA03g02360 | GATA family protein | |
CA03g08030 | GATA family protein | |
CA03g35040 | GATA family protein | |
CA04g15240 | GATA family protein | |
CA04g15250 | GATA family protein | |
CA05g18390 | GATA family protein | |
CA05g18400 | GATA family protein | |
CA05g20740 | GATA family protein | |
CA06g12750 | GATA family protein | |
CA06g24040 | GATA family protein | |
CA08g12420 | GATA family protein | |
CA09g16580 | GATA family protein | |
CA10g09180 | GATA family protein | |
CA11g18920 | GATA family protein | |
CA12g21330 | GATA family protein |
GATA factors were first identified as proteins that interact with conserved WGATAR (W = T or A; R = G or A) motifs involved in erythroid-specific gene expressionin vertebrates.
GATA factors are characterised by the presence of conserved, type-IV zinc-finger motifs Animal factors typically contain two C-x2-Cx17-C-x2-C zinc-finger domains. The majority of known fungal GATA factors contain a single C-x2-C-x17-C-x2-C finger with greatest similarity to the carboxyl (C) terminal finger of animal GATA factors.Several examples of fungal GATA factors containing a variant C-x2-C-x18-C-x2-C DNA-binding domain are also known.
Examples of both C-x2-C-x17-Cx2-C (Type IVa) and C-x2-C-x18-C-x2-C (Type IVb) GATA factors are found within fungi; animals onlycontain the former configuration, and plants only the latter. Plant GATA factors typically contain a single zinc finger. The Arabidopsis type-IV zinc-finger proteins may represent the previously defined family of nuclear GATA-binding proteins implicated in light-responsive transcription.
Teakle GR, Manfield IW, Graham JF, Gilmartin PM.
Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics.
Plant Mol Biol. 2002 Sep;50(1):43-57.
PMID: 12139008