PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Species | TF ID | Description |
---|---|---|
Arabidopsis thaliana (127) | AT1G03970.1 | G-box binding factor 4 |
AT1G06070.1 | bZIP family protein | |
AT1G06850.1 | basic leucine-zipper 52 | |
AT1G06850.2 | basic leucine-zipper 52 | |
AT1G08320.1 | bZIP family protein | |
AT1G08320.2 | bZIP family protein | |
AT1G08320.3 | bZIP family protein | |
AT1G13600.1 | basic leucine-zipper 58 | |
AT1G19490.1 | bZIP family protein | |
AT1G22070.1 | TGA1A-related gene 3 | |
AT1G32150.1 | basic region/leucine zipper transcription factor 68 | |
AT1G42990.1 | basic region/leucine zipper motif 60 | |
AT1G43700.1 | VIRE2-interacting protein 1 | |
AT1G45249.1 | abscisic acid responsive elements-binding factor 2 | |
AT1G45249.2 | abscisic acid responsive elements-binding factor 2 | |
AT1G45249.3 | abscisic acid responsive elements-binding factor 2 | |
AT1G49720.1 | abscisic acid responsive element-binding factor 1 | |
AT1G49720.2 | abscisic acid responsive element-binding factor 1 | |
AT1G58110.1 | bZIP family protein | |
AT1G58110.2 | bZIP family protein | |
AT1G59530.1 | basic leucine-zipper 4 | |
AT1G68640.1 | bZIP family protein | |
AT1G68880.1 | basic leucine-zipper 8 | |
AT1G75390.1 | basic leucine-zipper 44 | |
AT1G75390.2 | basic leucine-zipper 44 | |
AT1G77920.1 | bZIP family protein | |
AT2G04038.1 | basic leucine-zipper 48 | |
AT2G12900.1 | bZIP family protein | |
AT2G12940.1 | bZIP family protein | |
AT2G13150.1 | bZIP family protein | |
AT2G16770.1 | bZIP family protein | |
AT2G17770.1 | basic region/leucine zipper motif 27 | |
AT2G17770.2 | basic region/leucine zipper motif 27 | |
AT2G18160.1 | basic leucine-zipper 2 | |
AT2G21230.1 | bZIP family protein | |
AT2G21230.2 | bZIP family protein | |
AT2G21230.3 | bZIP family protein | |
AT2G22850.1 | basic leucine-zipper 6 | |
AT2G22850.2 | basic leucine-zipper 6 | |
AT2G31370.1 | bZIP family protein | |
AT2G31370.2 | bZIP family protein | |
AT2G31370.3 | bZIP family protein | |
AT2G31370.4 | bZIP family protein | |
AT2G31370.5 | bZIP family protein | |
AT2G31370.6 | bZIP family protein | |
AT2G35530.1 | basic region/leucine zipper transcription factor 16 | |
AT2G36270.1 | bZIP family protein | |
AT2G40620.1 | bZIP family protein | |
AT2G40950.1 | bZIP family protein | |
AT2G41070.1 | bZIP family protein | |
AT2G41070.2 | bZIP family protein | |
AT2G41070.3 | bZIP family protein | |
AT2G42380.1 | bZIP family protein | |
AT2G42380.2 | bZIP family protein | |
AT2G46270.1 | G-box binding factor 3 | |
AT2G46270.2 | G-box binding factor 3 | |
AT3G10800.1 | bZIP family protein | |
AT3G12250.1 | TGACG motif-binding factor 6 | |
AT3G12250.2 | TGACG motif-binding factor 6 | |
AT3G12250.3 | TGACG motif-binding factor 6 | |
AT3G12250.4 | TGACG motif-binding factor 6 | |
AT3G12250.5 | TGACG motif-binding factor 6 | |
AT3G17609.1 | HY5-homolog | |
AT3G17609.2 | HY5-homolog | |
AT3G17609.3 | HY5-homolog | |
AT3G17609.4 | HY5-homolog | |
AT3G19290.1 | ABRE binding factor 4 | |
AT3G19290.2 | ABRE binding factor 4 | |
AT3G19290.3 | ABRE binding factor 4 | |
AT3G30530.1 | basic leucine-zipper 42 | |
AT3G44460.1 | bZIP family protein | |
AT3G49760.1 | basic leucine-zipper 5 | |
AT3G51960.1 | basic leucine zipper 24 | |
AT3G51960.2 | basic leucine zipper 24 | |
AT3G54620.1 | basic leucine zipper 25 | |
AT3G54620.2 | basic leucine zipper 25 | |
AT3G54620.3 | basic leucine zipper 25 | |
AT3G56660.1 | basic region/leucine zipper motif protein 49 | |
AT3G56850.1 | ABA-responsive element binding protein 3 | |
AT3G58120.1 | bZIP family protein | |
AT3G62420.1 | basic region/leucine zipper motif 53 | |
AT4G01120.1 | G-box binding factor 2 | |
AT4G02640.1 | bZIP family protein | |
AT4G02640.2 | bZIP family protein | |
AT4G06598.1 | ||
AT4G34000.1 | abscisic acid responsive elements-binding factor 3 | |
AT4G34000.2 | abscisic acid responsive elements-binding factor 3 | |
AT4G34000.3 | abscisic acid responsive elements-binding factor 3 | |
AT4G34590.1 | G-box binding factor 6 | |
AT4G35040.1 | bZIP family protein | |
AT4G35900.1 | bZIP family protein | |
AT4G36730.1 | G-box binding factor 1 | |
AT4G36730.2 | G-box binding factor 1 | |
AT4G37730.1 | basic leucine-zipper 7 | |
AT4G38900.1 | bZIP family protein | |
AT4G38900.2 | bZIP family protein | |
AT4G38900.3 | bZIP family protein | |
AT5G06839.1 | bZIP family protein | |
AT5G06839.2 | bZIP family protein | |
AT5G06839.3 | bZIP family protein | |
AT5G06950.1 | bZIP family protein | |
AT5G06950.2 | bZIP family protein | |
AT5G06950.3 | bZIP family protein | |
AT5G06950.4 | bZIP family protein | |
AT5G06960.1 | OCS-element binding factor 5 | |
AT5G06960.2 | OCS-element binding factor 5 | |
AT5G07160.1 | bZIP family protein | |
AT5G08141.1 | basic leucine-zipper 75 | |
AT5G10030.1 | TGACG motif-binding factor 4 | |
AT5G10030.2 | TGACG motif-binding factor 4 | |
AT5G11260.1 | bZIP family protein | |
AT5G15830.1 | basic leucine-zipper 3 | |
AT5G24800.1 | basic leucine zipper 9 | |
AT5G28770.1 | bZIP family protein | |
AT5G28770.2 | bZIP family protein | |
AT5G28770.3 | bZIP family protein | |
AT5G38800.1 | basic leucine-zipper 43 | |
AT5G42910.1 | bZIP family protein | |
AT5G44080.1 | bZIP family protein | |
AT5G49450.1 | basic leucine-zipper 1 | |
AT5G60830.1 | basic leucine-zipper 70 | |
AT5G65210.1 | bZIP family protein | |
AT5G65210.2 | bZIP family protein | |
AT5G65210.3 | bZIP family protein | |
AT5G65210.4 | bZIP family protein | |
AT5G65210.5 | bZIP family protein | |
AT5G65210.6 | bZIP family protein |
The bZIP domain consists of two structural features located on a contiguous alpha-helix: first, a basic region of ~ 16 amino acid residues containing a nuclear localization signal followed by an invariant N-x7-R/K motif that contacts the DNA; and, second, a heptad repeat of leucines or other bulky hydrophobic amino acids positioned exactly nine amino acids towards the C-terminus, creating an amphipathic helix. To bind DNA, two subunits adhere via interactions between the hydrophobic sides of their helices, which creates a superimposing coiled-coil structure. The ability to form homo- and heterodimers is influenced by the electrostatic attraction and repulsion of polar residues flanking the hydrophobic interaction surface of the helices.
Plant bZIP proteins preferentially bind to DNA sequences with an ACGT core. Binding specificity is regulated by flanking nucleotides. Plant bZIPs preferentially bind to the A-box (TACGTA), C-box (GACGTC) and G-box (CACGTG), but there are also examples of nonpalindromic binding sites.
Jakoby M, Weisshaar B, Droge-Laser W, Vicente-Carbajosa J, Tiedemann J, Kroj T, Parcy F
bZIP transcription factors in Arabidopsis.
Trends Plant Sci, 2002. 7(3): p. 106-11.
PMID: 11906833